Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30931
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family ... 30 1.7
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 5.1
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 28 5.1
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 28 5.1
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 28 5.1
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein. 28 5.1
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 28 5.1
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 28 5.1
Z81056-8|CAB02907.2| 307|Caenorhabditis elegans Hypothetical pr... 27 9.0
L14331-5|AAA28098.2| 190|Caenorhabditis elegans Hypothetical pr... 27 9.0
>AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family
protein 31 protein.
Length = 747
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = -2
Query: 462 KSKNYMITFKNTVELQLEIFYCFHEILRHAPSLCSNTQIYDVIINRQYFEVFKKF*GVLC 283
+ K ++TF++T +QLE YC +LR + + + + ++ Y E LC
Sbjct: 566 QKKTAILTFQSTEPMQLEFKYCTKMLLRTDKPVGN----FSIQLSGPYLEHLLNLSHHLC 621
Query: 282 LFSATHRFMSHH 247
FS + F+ H
Sbjct: 622 RFSEYNLFVKAH 633
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/87 (24%), Positives = 40/87 (45%)
Frame = +1
Query: 157 INRFDRQLSDIKINSLKFYILISGYRKRYGMMTHKSVCC*KETEHASEFLENLKILSIND 336
+ +R L ++++ L+ L+ G + + + V KE E +E KILS++D
Sbjct: 1007 LEEIERNLDRLQVSDLEIADLVRGLEQEAAKLGER-VSQRKEAERTAE-----KILSMDD 1060
Query: 337 DVINLCIAAKRRSMPQNFMKTIKYFQL 417
D I+ I K + + +K +L
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLEL 1087
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/87 (24%), Positives = 40/87 (45%)
Frame = +1
Query: 157 INRFDRQLSDIKINSLKFYILISGYRKRYGMMTHKSVCC*KETEHASEFLENLKILSIND 336
+ +R L ++++ L+ L+ G + + + V KE E +E KILS++D
Sbjct: 1007 LEEIERNLDRLQVSDLEIADLVRGLEQEAAKLGER-VSQRKEAERTAE-----KILSMDD 1060
Query: 337 DVINLCIAAKRRSMPQNFMKTIKYFQL 417
D I+ I K + + +K +L
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLEL 1087
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 352 CIAAKRRSMPQNFMKTIKYFQL*FYGIFKRNHIIFAFA 465
C+A++ PQ F +KY + F GIF ++ FA
Sbjct: 405 CVASEHYGQPQWFTDFLKYAEFVFLGIFVVEMLLKLFA 442
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 352 CIAAKRRSMPQNFMKTIKYFQL*FYGIFKRNHIIFAFA 465
C+A++ PQ F +KY + F GIF ++ FA
Sbjct: 405 CVASEHYGQPQWFTDFLKYAEFVFLGIFVVEMLLKLFA 442
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 352 CIAAKRRSMPQNFMKTIKYFQL*FYGIFKRNHIIFAFA 465
C+A++ PQ F +KY + F GIF ++ FA
Sbjct: 539 CVASEHYGQPQWFTDFLKYAEFVFLGIFVVEMLLKLFA 576
>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
Length = 1053
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 352 CIAAKRRSMPQNFMKTIKYFQL*FYGIFKRNHIIFAFA 465
C+A++ PQ F +KY + F GIF ++ FA
Sbjct: 26 CVASEHYGQPQWFTDFLKYAEFVFLGIFVVEMLLKLFA 63
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 352 CIAAKRRSMPQNFMKTIKYFQL*FYGIFKRNHIIFAFA 465
C+A++ PQ F +KY + F GIF ++ FA
Sbjct: 539 CVASEHYGQPQWFTDFLKYAEFVFLGIFVVEMLLKLFA 576
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/87 (24%), Positives = 40/87 (45%)
Frame = +1
Query: 157 INRFDRQLSDIKINSLKFYILISGYRKRYGMMTHKSVCC*KETEHASEFLENLKILSIND 336
+ +R L ++++ L+ L+ G + + + V KE E +E KILS++D
Sbjct: 1007 LEEIERNLDRLQVSDLEIADLVRGLEQEAAKLGER-VSQRKEAERTAE-----KILSMDD 1060
Query: 337 DVINLCIAAKRRSMPQNFMKTIKYFQL 417
D I+ I K + + +K +L
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLEL 1087
>Z81056-8|CAB02907.2| 307|Caenorhabditis elegans Hypothetical
protein F09F3.12 protein.
Length = 307
Score = 27.5 bits (58), Expect = 9.0
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 511 VFRTLTIPRECGRVHGPSVVKWL 579
VF + +P++CG ++ P ++WL
Sbjct: 140 VFTVIGLPKDCGFLYFPETLEWL 162
>L14331-5|AAA28098.2| 190|Caenorhabditis elegans Hypothetical
protein K12H4.2 protein.
Length = 190
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 253 THKSVCC*KETEHASEFLENLKILSINDDVINLCIAAKRRS 375
THK +C + AS ENL+ L D V N ++ RRS
Sbjct: 93 THKIICSAFNSRQASAISENLRSLLKIDGVSNGSMSHARRS 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,961,611
Number of Sequences: 27780
Number of extensions: 245096
Number of successful extensions: 587
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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