Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30931
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    28   0.091
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.85 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.9  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 27.9 bits (59), Expect = 0.091
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +1

Query: 241 YGMMTHKSVCC*KETEHASEFLENLKILSINDDVINLCIAAKRRSMPQN 387
           +G+M + ++ C    EH     EN+ +++ N++ +   +A K   +PQ+
Sbjct: 320 FGLMNNSAIGC--WNEHQPLQRENMDMVAQNEETLQTVVAMKMMHLPQS 366


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 9/35 (25%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +1

Query: 286 EHASEFLENLKILSINDDVINLCIAAK-RRSMPQN 387
           EH S   +N+ +++ N+D + + ++ K ++++PQ+
Sbjct: 330 EHQSLDRQNIDVVARNEDTLQMVVSMKIKQNVPQS 364



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 170 SNLLIYNVSNNNKKTKKQHAICDFNKIMSY 81
           +N ++Y V N N     Q+A   F+++ S+
Sbjct: 198 TNTMVYMVDNKNTLIIYQNADDSFHRLSSH 227


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 286 LSLFSNTQIYESSFRIFFYSPKL 218
           L+++++  +YE S  IFF  P L
Sbjct: 204 LTIYADFPLYELSTIIFFLIPML 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,014
Number of Sequences: 438
Number of extensions: 3170
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)