Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30930
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 31 0.25
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 30 0.44
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 2.3
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 3.1
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 27 4.1
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 5.4
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 5.4
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 26 5.4
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 5.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.2
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 25 9.5
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 25 9.5
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 30.7 bits (66), Expect = 0.25
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 614 SMTTSQGYESMVAGAPPTILSPTAMSRPQHFPSGLGGWQSSRSGRRAPASVWGSWSL-PS 438
S TS+G AGAP S A S + P+G G SS +APAS S S+ P
Sbjct: 165 SKDTSRGVRKSKAGAPSDPSSVHAPSSLEK-PAGTGDLPSSEISTKAPASTTVSSSVDPG 223
Query: 437 TV 432
T+
Sbjct: 224 TI 225
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 29.9 bits (64), Expect = 0.44
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = -3
Query: 647 QSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTAMSRPQHFPSGLGGWQ----SSRSGR 480
+SS+ LSSL++ + TSQ S+ A + S + Q+ PS G + S S +
Sbjct: 186 RSSLNLSSLSHELQTSQDSPSL--SATNQLSSSDTLEPLQYPPSSFGSQRQFNASQDSPK 243
Query: 479 RAPASVWGSWS 447
R+P+ GSWS
Sbjct: 244 RSPSK--GSWS 252
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 308 NINSCPYVLQLLKNPNEANLN 370
+INS PY +++NP+E NL+
Sbjct: 305 SINSVPYTSNIVENPSEDNLS 325
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/87 (24%), Positives = 39/87 (44%)
Frame = -3
Query: 716 SKIAPFTQ*PAVSTYFPLMSAPPQSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTAMS 537
+ + P T +V++ SA S V+ S T S++T S+++ APP S + +
Sbjct: 182 ASVTPTTVAASVASSVDTDSASATISSVVDSATSSVSTVIP-SSIISAAPPDSASESTPA 240
Query: 536 RPQHFPSGLGGWQSSRSGRRAPASVWG 456
+ S +S + + +S WG
Sbjct: 241 STSYASSTTSATSTSTTSGSSGSSDWG 267
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 4 TCRFYIIGT-YIGKCF*FGHSSWLFWRSRPKVLLHNHAGHRTDLTAIAYPCM 156
TC+F + + ++ KC SS L + L H GH ++T I C+
Sbjct: 273 TCKFSKLNSLFLSKCIGLTDSSLLSLTKLSQSLTTLHLGHCYEITDIGVQCL 324
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 5 RVGFILLEPTLENVFNLDIHRGCSGDPDQKCCCTI 109
R GF+ L L NV + D+ + GD D T+
Sbjct: 1073 RRGFLRLNKKLGNVIHYDLRKSSEGDVDSNYVTTM 1107
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 660 ERSATEQHRPLEPHILDDHQPR-IRVDGCGRT 568
ERS E RP DD++PR +R GR+
Sbjct: 67 ERSYREDERPRRERRYDDYEPRSLRYSSVGRS 98
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 403 TTEHMLCYCTTVDGSDHDP 459
+T + LC CTTV G H P
Sbjct: 124 STNNALCCCTTVHGHPHMP 142
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 347 NPNEANLNYVRGSVCQGSEQQSICCVTAP 433
+P+ A LN++ S C QS+ C T P
Sbjct: 285 HPDPARLNFLSFSFCVNPMNQSLDCNTTP 313
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.2
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -3
Query: 665 LMSAPPQSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTAMSRPQHFPSGL---GGWQS 495
L S+ P +S SSL+ S ++SQ S + + + +PT+ S S + S
Sbjct: 164 LSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPS 223
Query: 494 SRSGRRAPASVWGSWSLPST 435
S S +S + S+PST
Sbjct: 224 SSSSSTLTSSSLSTSSIPST 243
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -3
Query: 566 PTIL-SPTAMSRPQHFPSGLGGWQSSRSGRRAPASVWGSWSLP 441
PT L S + P F +G G + +G A +W W LP
Sbjct: 167 PTALGSSLGVLLPMRFLAGFFGSPALATGGATLADIWQPWLLP 209
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 421 CYCTTVDGSDHDPQTEAGARLP 486
CY D DH+P+TE + P
Sbjct: 138 CYLAYPDSRDHEPRTEGESSSP 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,625,464
Number of Sequences: 5004
Number of extensions: 78418
Number of successful extensions: 233
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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