Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30930
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1569 - 27924930-27925034,27925149-27925167,27925271-279254...    30   1.9  
02_01_0292 + 1949926-1950037,1950121-1950250,1950551-1950616,195...    30   1.9  
09_03_0078 + 12137124-12137672                                         30   2.5  
11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712...    29   3.3  
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717...    29   3.3  
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199...    29   4.3  
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128...    29   4.3  
03_01_0564 - 4176177-4178096                                           29   4.3  
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431...    29   5.7  
07_01_0240 - 1749674-1750514,1751157-1752040                           29   5.7  
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           29   5.7  
12_01_0461 + 3618414-3618782,3619664-3619794,3620177-3620294,362...    28   7.5  
11_03_0070 + 9576282-9576546,9576724-9576758                           28   7.5  
10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777           28   7.5  
02_02_0101 - 6788090-6788356,6788770-6788940                           28   7.5  
07_03_0922 - 22612773-22613321,22613616-22614189,22614389-226144...    28   9.9  
05_07_0278 + 28911722-28911934,28912154-28913055,28913142-289135...    28   9.9  
03_04_0076 - 17068516-17068838,17068897-17069198,17069282-170694...    28   9.9  
03_01_0217 - 1712979-1713794                                           28   9.9  

>08_02_1569 -
           27924930-27925034,27925149-27925167,27925271-27925490,
           27925925-27925971,27926502-27927025
          Length = 304

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -3

Query: 659 SAPPQSSI----VLSSLTYSMTTSQGYESMVAGAPPTILSPTAMSRPQHFPSGLGGW 501
           SAPP SS       S+   S ++S GY     G P +   P   S  Q +P G+GG+
Sbjct: 17  SAPPASSYGYTTTPSAPPASSSSSYGYGHGGGGYPSSTYPPPPPSSSQAYPMGMGGF 73


>02_01_0292 +
           1949926-1950037,1950121-1950250,1950551-1950616,
           1950718-1950789,1951198-1951607,1951789-1951994,
           1952121-1952407,1952527-1952665,1952746-1953141
          Length = 605

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 705 SFHAMTGSEHVLPADERSATEQH-RPLEPHILDDHQPRIRVDGCG 574
           +  A    E++    +R    QH RP   H+L D + R+RV GCG
Sbjct: 420 ALEAAKALEYLHEGGQRQVVHQHFRP--EHVLVDGEMRVRVSGCG 462


>09_03_0078 + 12137124-12137672
          Length = 182

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 624 AREDDAALWRSAHQREV-RAHCRSLRERSDLGCRHAENSASRR 749
           A E+DA+   S+  R+V  A  R+LR RSD   RH  +  +RR
Sbjct: 134 AAEEDASSSSSSLARDVWEAQLRTLRARSDERRRHGADGTARR 176


>11_06_0152 +
           20669949-20670326,20670887-20670997,20671079-20671280,
           20671393-20671675,20672145-20672234,20672366-20672473,
           20672595-20672975,20673250-20673324,20673685-20673797,
           20676233-20676742,20676807-20677300
          Length = 914

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 292 LTISCVAWTANSRTEFLVPHWESLKNFSS 206
           + ++CVAW AN R +  V H+  +K  SS
Sbjct: 249 MLLACVAWPANFRNQTFVNHFCRVKTVSS 277


>03_05_0062 +
           20370608-20370977,20371062-20371541,20371661-20371731,
           20371836-20371912,20372076-20372223,20372346-20372507,
           20372743-20372940
          Length = 501

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = -3

Query: 725 VPTSKIAPFTQ*PAVSTYFPLMSAPP----QSSIVLSSLTYSMTTSQGYESMVAGAPPTI 558
           +P+    P      ++T  P +  PP     S I+ SSLT + T+    ++  AGAPP  
Sbjct: 1   MPSPGTPPSPPTTLITTQAPPIQPPPPPGGNSMIMPSSLTTAGTSQSPPDATTAGAPPP- 59

Query: 557 LSPTAMSRPQHFPSGL 510
            +P+  +   + PSGL
Sbjct: 60  PAPSVGAWGGNVPSGL 75


>11_06_0315 +
           22318155-22318210,22319743-22319769,22319868-22319990,
           22320867-22321110,22321487-22321981
          Length = 314

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 241 VPHWESLKNFSSCWVLL*LFNMARSAWHSY 152
           +P W S+K    CW++L  FN A   + +Y
Sbjct: 70  LPFWPSMKLIFICWLVLPYFNGAAFVYQNY 99


>04_01_0123 -
           1283197-1283292,1283330-1284439,1284790-1285177,
           1285523-1287609
          Length = 1226

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +3

Query: 519 REVLRPRHSRRRQNRWWCARNHRLVSLAGGHRVCEAREDDAALWRSAHQREVRAHCRSLR 698
           +E  R R +  R  R   +R H   +   G R  E R+ D     +  +R V  +    R
Sbjct: 298 QEARRTRDNVNRSRRHVSSRRHDNGNR--GDRSNEDRDQDNHHDHNDRERRVPDNTGRGR 355

Query: 699 ERSDL--GCRHAENSASRRVQHDDPGR 773
             +D+  G R  +NS  RR    DPGR
Sbjct: 356 RHNDVDDGDRRRDNSGRRRQDSRDPGR 382


>03_01_0564 - 4176177-4178096
          Length = 639

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 529 NTSLPD*GGGSHLALAGVHPLRSGGRGHYRRLW 431
           NTSLP     SH+A+   H +R G     R LW
Sbjct: 334 NTSLPQWMWASHVAIYSNHGIRGGSPDSSRPLW 366


>09_06_0132 -
           21042653-21042873,21042950-21043027,21043106-21043167,
           21043504-21043578,21043664-21043752,21043825-21043905,
           21044939-21045076,21046299-21046429,21046521-21046592,
           21047218-21047275,21047362-21047461,21047544-21047617,
           21047701-21047836,21047913-21048137,21048211-21048446,
           21048949-21049081,21049195-21049484
          Length = 732

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +2

Query: 251 SSAVCCPCNAADGQQGNCVNINSCPYVLQLLKNPNEANLNYVRGSVCQGSEQQSICCVTA 430
           S  V C  N  D Q       NSCPY +Q L +   ++   V   +   S+      VTA
Sbjct: 156 SRKVPCSSNLCDLQNACRSKSNSCPYSIQYLSDNTSSSGVLVEDVLYLTSDSAQSKIVTA 215

Query: 431 P 433
           P
Sbjct: 216 P 216


>07_01_0240 - 1749674-1750514,1751157-1752040
          Length = 574

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 24  WNLHWKMFLIWTFIVAVLAIQTKSVVAQSCR 116
           W LH    L WT +V + AI T ++VA   R
Sbjct: 66  WLLHTFCILQWTVLVQIAAINTITLVATDAR 96


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = -3

Query: 671 FPLMSAPPQSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTAMSRPQHFPSGLG 507
           FP  S PPQS +V  S        Q  E  ++ APP    P       + P   G
Sbjct: 362 FPQYSQPPQSGMVNPSTPLPPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSG 416


>12_01_0461 +
           3618414-3618782,3619664-3619794,3620177-3620294,
           3620602-3620654,3620758-3620807,3620912-3621010,
           3621511-3621620,3621773-3621900,3622071-3622161,
           3622610-3622693,3622863-3623083,3623449-3623527,
           3624134-3624283,3624326-3624470,3624604-3624983,
           3625096-3625197
          Length = 769

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 668 PLMSAPPQSSIVLSSLTYSMTTSQGYESMVAGAPPT 561
           PL+SA P  +   S L      S G+  M A +PPT
Sbjct: 36  PLVSAIPSRAFGSSGLPARACASSGFSGMAAVSPPT 71


>11_03_0070 + 9576282-9576546,9576724-9576758
          Length = 99

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = -3

Query: 662 MSAPPQSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTAMSRPQHFPSGLGGWQSSRSG 483
           M A   +S+VL+ +T  + + +   +    APP ++     + P     G+GGW  SR+G
Sbjct: 21  MVAVVAASVVLTVVT--VASCRRRRAHPRRAPPAVVVAVVSAAPV---LGVGGWGRSRTG 75

Query: 482 RRAPASVWGSWSLPSTV 432
           +R   S  G      TV
Sbjct: 76  KRRGLSGGGGGEGGGTV 92


>10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777
          Length = 323

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 267 QQTAELNSWCRIGSPSRTSHLA--GFSSD 187
           Q+TAELN    +GS  +TSHL   G++ D
Sbjct: 224 QRTAELNKVLELGSGVKTSHLVRLGYAED 252


>02_02_0101 - 6788090-6788356,6788770-6788940
          Length = 145

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 43  CF*FGHSSWLFWR--SRPKVLLHNHAGH 120
           CF   H+S++ WR  SRPK++ +   GH
Sbjct: 75  CFPVAHTSFMSWRDESRPKIVNNLRRGH 102


>07_03_0922 -
           22612773-22613321,22613616-22614189,22614389-22614466,
           22615455-22615504,22616215-22616448
          Length = 494

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 633 DDAALWRSAHQREVRAHCRSLRERSDLGCRHAENSASRRVQHD 761
           +D  LW S  +R VR     L   +D  CR  EN+++  +Q D
Sbjct: 219 EDGLLWGSRKKRAVRDRRTFLM--ADNSCRAGENTSTSHIQTD 259


>05_07_0278 +
           28911722-28911934,28912154-28913055,28913142-28913581,
           28913628-28913955,28914101-28914743
          Length = 841

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 388 LSRIRTTEHMLCYCTTVDGSDHDPQTEAGARLPERDD 498
           + R+R T H L    T  G+      E  A LP RDD
Sbjct: 243 MERMRDTTHSLLKHNTRPGTGSGGDDEIAAELPRRDD 279


>03_04_0076 -
           17068516-17068838,17068897-17069198,17069282-17069435,
           17069506-17069965,17070413-17070492,17070813-17070869,
           17071757-17071838
          Length = 485

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 266 CPCNAADGQQGNCVNINSCPYVLQLLKNPNEANL 367
           C C   + + G+CV  NS PY+  ++  P + +L
Sbjct: 264 CACGCQNKKPGSCVEGNS-PYLASVVNGPGKGSL 296


>03_01_0217 - 1712979-1713794
          Length = 271

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/66 (27%), Positives = 25/66 (37%)
 Frame = +1

Query: 436 VDGSDHDPQTEAGARLPERDDCHPPNPEGKCCGRDIAVGDKIVGGAPATIDSYPWLVVIE 615
           +D S   P  +A       +  H     G    R +  GD+   G P+T+D  PWL    
Sbjct: 61  LDCSPPTPAADADVDSRSEEHMHADVGGGLDLQRAVGGGDE-KAGTPSTVDDVPWLQASA 119

Query: 616 YVRLER 633
             R  R
Sbjct: 120 VARKPR 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,164,238
Number of Sequences: 37544
Number of extensions: 643566
Number of successful extensions: 2070
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2070
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)