Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30930
         (802 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    32   0.51 
At2g35550.2 68415.m04355 expressed protein                             30   1.6  
At2g35550.1 68415.m04354 expressed protein                             30   1.6  
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote...    25   2.4  
At1g19070.1 68414.m02373 F-box family protein similar to putativ...    29   4.7  

>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 23/68 (33%), Positives = 35/68 (51%)
 Frame = -3

Query: 746 PRRTVFGVPTSKIAPFTQ*PAVSTYFPLMSAPPQSSIVLSSLTYSMTTSQGYESMVAGAP 567
           P  +    P S ++P +  P +S        PP SS  LSSL+ S++ S    S  + AP
Sbjct: 41  PSSSPSSAPPSSLSPSSP-PPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPP-SSSPSSAP 98

Query: 566 PTILSPTA 543
           P+ LSP++
Sbjct: 99  PSSLSPSS 106


>At2g35550.2 68415.m04355 expressed protein
          Length = 226

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 578 AGAPPTILSPTAMSRPQHFPSGLGGWQSS 492
           +G PP + S T +SR   +  G+GGWQSS
Sbjct: 131 SGVPPPVCSCTGVSRVC-YKWGMGGWQSS 158


>At2g35550.1 68415.m04354 expressed protein
          Length = 271

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 578 AGAPPTILSPTAMSRPQHFPSGLGGWQSS 492
           +G PP + S T +SR   +  G+GGWQSS
Sbjct: 176 SGVPPPVCSCTGVSRVC-YKWGMGGWQSS 203


>At2g40040.1 68415.m04920 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to DCL
           protein, chloroplast precursor (Defective chloroplasts
           and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
           esculentum]
          Length = 839

 Score = 25.4 bits (53), Expect(2) = 2.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 521 PSGLGGWQSSRSGRRAPASVWGS 453
           P+ +G W   +S  ++  + WGS
Sbjct: 439 PAAMGNWDKKKSDTKSGPAAWGS 461



 Score = 22.6 bits (46), Expect(2) = 2.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 470 ASVWGSWSLPSTVVQ 426
           A  WGSW  PS   +
Sbjct: 498 AGAWGSWGQPSPTAE 512


>At1g19070.1 68414.m02373 F-box family protein similar to putative
           non-LTR retroelement reverse transcriptase GI:3738337
           from [Arabidopsis thaliana] ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 83

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 621 HILDDHQPRIRVDGCGRTTNDFVSDGYVSAATLPFR 514
           H++DD    + V GCG+T  DFV      ++ LP R
Sbjct: 45  HLVDDD---LEVGGCGQTLIDFVDRVLAVSSNLPIR 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,860,262
Number of Sequences: 28952
Number of extensions: 456448
Number of successful extensions: 1327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)