Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30929X
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 36 0.004
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 31 0.12
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 30 0.20
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 29 0.47
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 29 0.47
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 29 0.62
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 28 0.82
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 1.1
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 27 1.4
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 27 1.9
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 27 2.5
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 27 2.5
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 3.3
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 4.4
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 26 4.4
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 26 4.4
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 4.4
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 26 4.4
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 26 4.4
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 5.8
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 25 7.6
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 7.6
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 25 7.6
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 35.9 bits (79), Expect = 0.004
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +2
Query: 47 ENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNEDPIYLLKVKD 205
ENSI QDE+ +Q +IEK+ E I V E E L TLE E E P ++V+D
Sbjct: 908 ENSILQDEVEETRQDDIEKDELEDIKEVKEDENLTTLE-ETIEIPANDIEVQD 959
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 31.1 bits (67), Expect = 0.12
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 77 MKQQREIEKEISETIPLVGEIEELQTLEKEYNEDPI 184
+ QQ + E +E + +G E L LEK Y EDP+
Sbjct: 90 LDQQVMVRHEAAEALGALGFTESLPVLEKYYKEDPL 125
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 30.3 bits (65), Expect = 0.20
Identities = 25/77 (32%), Positives = 37/77 (48%)
Frame = +2
Query: 53 SINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNEDPIYLLKVKDLSSKYKSIR 232
SI E K+Q EIEKEI ++ L E + + L K Y E I LK ++ + + +R
Sbjct: 357 SIKAQEEERKRQAEIEKEIRQS-RLQEEERKKKKLAK-YTEVIISNLKASNIEAFLEYLR 414
Query: 233 RTRPDGNFSFARSHTHI 283
NF F + H+
Sbjct: 415 SNDLSINFQFYPKNVHL 431
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 29.1 bits (62), Expect = 0.47
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +2
Query: 5 DDASSSSGITGNTVENSINQDEL---IMKQQREIEKEISETIPLVGEIE-ELQTLEKEYN 172
+D SG+ G+ + +S D+L I++ Q EK+ G +E L +L +
Sbjct: 85 EDLGGPSGLDGSQLSSSFQNDQLLNVILEDQFATEKDSDNGAVNYGALEAALNSLMSQVT 144
Query: 173 EDPIYLLKVKDLSSKY 220
I +KDL + Y
Sbjct: 145 SKEILYEPLKDLEANY 160
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 29.1 bits (62), Expect = 0.47
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +2
Query: 14 SSSSGITGNTVENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNEDPIYLL 193
+ GITG + E Q + + QQ ++KE+ + + + E E++ N+ P L
Sbjct: 202 NEQEGITGQSFERGDAQLQPVKLQQMPMDKEMEKIVEMDLEEEDMMHQNDPNNQSPKLLK 261
Query: 194 KVKDL 208
+ + L
Sbjct: 262 EFRKL 266
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 28.7 bits (61), Expect = 0.62
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +1
Query: 265 AFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETFMEVIQRVGEHAG 444
AF+++ +E K E D EIAKNS + A G D + + I+ VG+ +
Sbjct: 84 AFTFS-IENFKRSKYEVDMLMEIAKNSLTQITAHG-------DLVDQYGIRIRIVGDLSR 135
Query: 445 STPDLIET 468
PD++ET
Sbjct: 136 LQPDVLET 143
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 28.3 bits (60), Expect = 0.82
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +1
Query: 283 LERLLTDKQEYDKFYEIAKNSKDILVA-LGFSQFTVEDFYETFM---EVIQRV 429
LERLL+D Q +KF + KN + LV +G + + F T + EVI+R+
Sbjct: 32 LERLLSDAQPTEKFNSLIKNMAERLVLFVGQIEELKDAFCNTTIVSEEVIERI 84
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 59 NQDELIMKQQREIEKEI---SETIPLVGEIEELQTLEKE 166
NQ+ LI++++ E+EK I SE + +E Q++E+E
Sbjct: 141 NQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQE 179
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 71 LIMKQQREIEKEISETIPLVGEIEELQTLEKEYN 172
++ +QQREI+ + + IEELQTL N
Sbjct: 53 VVQRQQREIDNQKRDLCTKTKHIEELQTLLSNAN 86
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 83 QQREIEKEISETIPLVGEIE-ELQTLEKEYNEDPIYLLKVKDLSSKYKSIRRTRPD 247
Q + EK+ E + E +LQT+ +EY + +++++++L + R+T D
Sbjct: 218 QAKTWEKKFREALRDSKEYAAQLQTIHEEYEQQQAHIVRMEELIHAVEKERKTETD 273
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/48 (20%), Positives = 30/48 (62%)
Frame = +2
Query: 41 TVENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNEDPI 184
+ +NS ++ K++++ + + +T+ +I+E++ +KE +E+P+
Sbjct: 263 SAQNSAKLEKEKAKEKQKDKDQEQDTVSDKNQIDEIEKGQKEVDEEPV 310
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 289 RLLTDKQEYDKFYEIAKNSKDILVALGFSQFTV-EDFYET 405
RL EYD+FY I S + + SQF + ED ET
Sbjct: 172 RLDPKSSEYDEFYIINYASVTKSITISHSQFAINEDINET 211
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +2
Query: 104 EISETIPLVGEIEELQTLEKEYNEDPIYL-------LKVKDLSSKYK 223
+I E L+GEIEE + K +N + I + LK +D+S+ ++
Sbjct: 888 QIREISQLIGEIEEFTKIAKAFNVEAILVDHKVLISLKSRDISNHFQ 934
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 4.4
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 41 TVENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNEDPIYLLKVKDLSSKY 220
TVEN++N DE+ E +E+ ++I + ++ +L+ K + IY L V +
Sbjct: 583 TVENNVNVDEI------ENYEEVRDSI--LKKLSDLRDRPKRSEKPRIYHLDVASMYPNI 634
Query: 221 KSIRRTRPD 247
R +PD
Sbjct: 635 MITNRLQPD 643
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 113 ETIPLVGEIEELQTLEKEYN 172
+T+P +G++ LQ + KEYN
Sbjct: 206 DTLPEIGKLFHLQEVHKEYN 225
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 68 ELIMKQQREIEKEISETIPLVGEIEELQT 154
E I+K +E+E E+ TIP++ + +E++T
Sbjct: 28 EGIVKAYKELEAELPVTIPVIIDGKEVET 56
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = -2
Query: 391 LQR*TAKTLRRREYL*NFLLFRKTYHIPAYQSVSVP--NMRMRTRERKIAIGTRSSNAFV 218
+Q+ +K +R + + NF + YHIPA +SV + R+ K + T + +
Sbjct: 123 IQKQHSKLRQRLDSILNFSRLQPAYHIPARKSVPTDAYTPMVSYRKLKSKLKTTLLDFYD 182
Query: 217 FRRQIFHFEQINR 179
+ + + ++ +N+
Sbjct: 183 YLKLVSQYQHLNQ 195
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 411 HKSFVKIFNGELRKP*GDENIFRIFC 334
+K V +F E+ P GDE I ++FC
Sbjct: 269 NKDKVALFKSEIFGPNGDEYITQLFC 294
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 158 EKEYNEDPIYLLKVKDLSSKYKSIR 232
E+ YN YL + D KYKS+R
Sbjct: 293 EESYNPPEEYLKQSSDFPKKYKSLR 317
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 74 IMKQQREIEKEISETIPLVGEIEELQTLEKEYNEDPIYLLKVKDLSSKYKS 226
+ Q E+EK + ++ V +I+E+ +EKE + V + S + +S
Sbjct: 71 LFNQIEELEKSKNASVESVSKIDEIDFIEKESTDKSQQSFSVPETSIQPQS 121
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 451 PDLIETVRMELHDKFNKQGF 510
PD+IE V ME+ + ++ GF
Sbjct: 184 PDMIELVEMEMRELLSEYGF 203
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 167 YNEDPIYLLKVKDLSSKY 220
Y+E+P YL +VK+LS +
Sbjct: 158 YSENPFYLFEVKNLSISF 175
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 235 NASRWQFFFRAFSYAYLERLLTDK 306
NA+ WQ+F F Y L L+ D+
Sbjct: 139 NANVWQYFTDLFDYLPLTALIEDR 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,971
Number of Sequences: 5004
Number of extensions: 45947
Number of successful extensions: 164
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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