Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30929X
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 47 9e-06
11_03_0060 - 9406273-9407142 29 2.5
09_06_0146 + 21186889-21187178,21187321-21187435,21188595-211886... 29 3.4
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805... 29 3.4
04_04_0016 - 22167780-22167873,22167978-22168272,22168380-221684... 28 5.9
02_05_0153 - 26315923-26316024,26316173-26316267,26316737-263167... 28 5.9
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 28 5.9
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 27 7.7
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 27 7.7
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 27 7.7
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789... 27 7.7
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 47.2 bits (107), Expect = 9e-06
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +1
Query: 256 FFRAFSYAYLERLLT--DKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETFMEVIQRV 429
F+R+F ++YLE +L DK E ++ + + K L LG+ +FT EDF+ F++ ++ V
Sbjct: 158 FYRSFMFSYLEHILETQDKAEVERILKKIEQCKKTLADLGYIEFTFEDFFSIFIDQLESV 217
Score = 35.9 bits (79), Expect = 0.022
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 95 IEKEISETIPLVGEIEELQTLEKEYNE-DPIYLLKVKDLSSKYKSIRRTRPDGNFSFARS 271
+ K IS + +E L TL E+ PI K+K L +Y ++RRTR DGN F RS
Sbjct: 103 LNKFISVVSIFILWMEPLSTLAAEFQSGSPILQEKIKLLGEQYDALRRTRGDGN-CFYRS 161
>11_03_0060 - 9406273-9407142
Length = 289
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 77 MKQQREIEKEISETIPLVGEIEELQTLEKE---YNEDPIYLLKVKDL 208
+K R E ISE +GE++ELQTLE + E P ++++K+L
Sbjct: 52 LKYLRLSEVSISELPEQIGELQELQTLELQRTSIKELPKSIVRLKNL 98
>09_06_0146 +
21186889-21187178,21187321-21187435,21188595-21188686,
21188839-21188952,21189139-21189193,21189348-21189458,
21190226-21190279,21190362-21190537,21190623-21190730,
21191332-21191405,21191500-21191675,21192169-21192264,
21192534-21192614,21192713-21192766,21193246-21193380,
21193453-21193533
Length = 603
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 379 FTVEDFYETFMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQGFLIT 519
F+ D Y ++V VG H T DLIE+VR E+ QG+ T
Sbjct: 240 FSTNDGYS--LDVFVVVGWHDEETEDLIESVRKEIGKIDETQGWSTT 284
>04_04_1401 +
33279092-33279286,33280223-33280306,33280459-33280524,
33280945-33281028,33281181-33281246,33281719-33281802,
33281955-33282020,33282323-33282388,33282667-33282726,
33282805-33282888,33282968-33283111,33283552-33283586,
33283694-33283746,33283828-33283928,33284516-33284974
Length = 548
Score = 28.7 bits (61), Expect = 3.4
Identities = 8/28 (28%), Positives = 21/28 (75%)
Frame = +1
Query: 256 FFRAFSYAYLERLLTDKQEYDKFYEIAK 339
F+RAF ++Y+ER++ + + ++ E+++
Sbjct: 276 FYRAFIFSYMERIVAMQDDLERIIEVSR 303
>04_04_0016 -
22167780-22167873,22167978-22168272,22168380-22168455,
22168665-22168853,22168955-22169176,22169315-22169413,
22169502-22169582,22169753-22170060,22171611-22171950,
22172047-22172110,22172191-22172412,22172865-22173043
Length = 722
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +1
Query: 406 FMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQGFLI 516
+++++ RVG G + D + + ++LH++F G +I
Sbjct: 377 YLDMVSRVGLFRGCSDDFLSQIVLKLHEEFFLPGEVI 413
>02_05_0153 -
26315923-26316024,26316173-26316267,26316737-26316784,
26316925-26317045,26317682-26317736,26317820-26317935,
26318479-26318547,26318909-26319018,26319985-26320069
Length = 266
Score = 27.9 bits (59), Expect = 5.9
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -3
Query: 426 SLDYFHKSFVKIFNGELRKP*GDENIFRI-FCYFVKLIIFLLISQ*AFQICV*ERAKEKL 250
+L YF K+F K F LRK GD I+ F I F+LI Q+ + K +
Sbjct: 136 NLVYFSKNFPKSFQELLRKQNGDRAIWEYPFAVAGVNITFMLI-----QMLDLQSVKPRS 190
Query: 249 PSGRVRLMLLYFEDKSFTL 193
G V L LL D++F +
Sbjct: 191 FIGAVFLKLLSENDQAFDI 209
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 349 DILVALGFSQFTVEDFYETFMEVIQRVGEHAGSTPDLIETV 471
DI +A+G + E F E EVI+ + G PD++E V
Sbjct: 982 DIRLAMGAYYGSWEAFLEDVQEVIRNLHTAFGDRPDVLEMV 1022
>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +2
Query: 2 ADDASSSSGITGNTVENSINQDELIMKQQREIEKEISET----IPLVGEIEELQTLEKE 166
AD+ S + +E + E I+KQQ+ +E+E++E + L E+E ++L E
Sbjct: 1320 ADEISDALVSVQRELEKKTSAMESILKQQKVLEEELAENGAALLILRSELEHSESLSSE 1378
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +2
Query: 92 EIEKEISETIPLVGEIEE-LQTLEKEYNEDPIYLLKVKDLS 211
E KE+ E+ L+ ++EE + L++++NE+ L ++K+ S
Sbjct: 426 ESTKEVEESSSLIPQLEEEIPKLQEKFNEEEKVLEQIKENS 466
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +1
Query: 289 RLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETFMEVIQRVGEHAGSTPDLIET 468
+ LT Q Y AK +D+ L + VED + ++IQ G+H S D +
Sbjct: 509 KTLTTVQGIGGEYNYAKVLRDLKRELCCNGNVVED--KELGKIIQLQGDHRNSVSDFLAK 566
Query: 469 VRMELHDKFNKQGF 510
M D GF
Sbjct: 567 AGMVRKDNIKVHGF 580
>01_01_0998 -
7894254-7894515,7895133-7895270,7896049-7896246,
7896334-7896786,7896877-7897098,7898100-7898227,
7899325-7899432
Length = 502
Score = 27.5 bits (58), Expect = 7.7
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Frame = -1
Query: 296 SKRSKYAYENARKKNCHRDAFV*CFCISKTNLSL*ANKS-DPRYILSLKSAILQ----FH 132
S Y YE+ R++ R +SK NKS + R LSLKSA F
Sbjct: 240 SSSESYKYEDTRRRKGARRNNK-RKSLSKRPEDHDKNKSTNLRPYLSLKSAFFSLCTAFK 298
Query: 131 QPTVLFPISLFLF-HVAV 81
QPT+L P++ F F +VA+
Sbjct: 299 QPTILRPMAWFFFSNVAI 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,070,087
Number of Sequences: 37544
Number of extensions: 239495
Number of successful extensions: 651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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