Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30929X
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27501| Best HMM Match : OTU (HMM E-Value=0.064)                     80   1e-15
SB_32124| Best HMM Match : K-box (HMM E-Value=4.1)                     31   0.85 
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)                     31   0.85 
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)                     30   1.5  
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_41462| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_22058| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)                     28   6.0  
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               28   6.0  
SB_4406| Best HMM Match : NGF (HMM E-Value=6.8)                        28   6.0  
SB_56020| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_41996| Best HMM Match : Tropomyosin (HMM E-Value=0.26)              27   7.9  
SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)         27   7.9  
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        27   7.9  

>SB_27501| Best HMM Match : OTU (HMM E-Value=0.064)
          Length = 201

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 34/62 (54%), Positives = 47/62 (75%)
 Frame = +1

Query: 256 FFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETFMEVIQRVGE 435
           FFRAF ++Y E+LLTD++EY +F ++A  SKD LV L F  FT+EDF+E FMEV+  +G 
Sbjct: 19  FFRAFGFSYFEKLLTDEKEYQRFKDLAARSKDELVELNFPAFTIEDFHEVFMEVLDMMGN 78

Query: 436 HA 441
           +A
Sbjct: 79  NA 80



 Score = 36.7 bits (81), Expect = 0.013
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = +3

Query: 495 QQAGISDYIVVYLRLITSGQLQ 560
           Q  GIS+Y+VVYLRL+TS QLQ
Sbjct: 90  QDEGISNYLVVYLRLLTSAQLQ 111


>SB_32124| Best HMM Match : K-box (HMM E-Value=4.1)
          Length = 207

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = +2

Query: 56  INQDELIMKQQREIEK----EISETIPLVGEIEELQTLEKEYNEDPIYLLKVKDLS 211
           ++Q+E+++KQ +E+EK    ++ +      EIE L+ + +E N   + L K  ++S
Sbjct: 50  VDQNEILLKQVKELEKVRDEQMDDLEDQYKEIEHLKEINEELNNRNVELSKADNVS 105


>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
          Length = 1381

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = +2

Query: 56  INQDELIMKQQREIEK----EISETIPLVGEIEELQTLEKEYNEDPIYLLKVKDLS 211
           ++Q+E+++KQ +E+EK    ++ +      EIE L+ + +E N   + L K  ++S
Sbjct: 787 VDQNEILLKQVKELEKVRDEQMDDLEDQYKEIEHLKEINEELNNRNVELSKADNVS 842


>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
          Length = 873

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
 Frame = +1

Query: 142 RIADFRERI*RGSDLFAQSERFVFEIQKH*TNASRWQFFFRAFSYAYLERLLTDKQEYDK 321
           ++   R R+ + +D+  + ++ +       TN       F A  Y   + +L  K+EY  
Sbjct: 269 KLKTLRFRVLKTNDVLTKDKQALERHYNSITNGINATMPFTAEGYEKAKTIL--KEEYGN 326

Query: 322 FYEIA----KNSKDILVALGFSQFTVEDFYETFMEVIQRVGEHAGSTPDLIETVR 474
             +I     KN  D+ V  G S   V+DFY+T    +Q + E  G   D+   VR
Sbjct: 327 SSDIKNIYIKNIMDLPVITGTSPRKVKDFYKTLRFNVQSL-ETLGRLHDVRGNVR 380


>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
 Frame = +2

Query: 53  SINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNEDPIYLLKVKDLSSKYKSIR 232
           S   D+L ++Q REI ++    + L GEI  L   +K + E  ++L  + + + KYK+  
Sbjct: 2   SFMSDKLDIQQLREIWRQNGPDVKLAGEISNLLLNKKCFFELEMFLSTLPN-TEKYKTEE 60

Query: 233 R-TRPDGNFSFARSHTHIWNAY*LISRNMISFTK*QKILKIFSS 361
              R      F R      N Y L+  N  +FT  + ++K++ +
Sbjct: 61  ALNRSRAYLEFQRK--RYGNLYQLLKGN--TFTDAEDLVKLWDA 100


>SB_41462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 35  GNTVENSI--NQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNED 178
           G  VEN I  NQDE  +K+Q E EK++S+       I+  Q LE+   ED
Sbjct: 174 GKKVENMIAENQDEHDIKKQAECEKDLSDK---EDYIQAKQMLEQTVLED 220


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 10/68 (14%)
 Frame = +2

Query: 5   DDASSSSGITGNTVENSINQDELI-------MKQQREIEKEI--SETIPLVGEIE-ELQT 154
           DD+ SSS  T N  +NS  ++E+        +K+QRE  K++  +E   +  EIE + +T
Sbjct: 7   DDSLSSSSETENCEDNSFTEEEMAQFRKFDSLKEQREFNKQLYCAEISNIAEEIEMKKKT 66

Query: 155 LEKEYNED 178
            EK+  ++
Sbjct: 67  DEKKVKKN 74


>SB_22058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 537 DEGTPLCNQKSLLVELIMKLHTNCFYQIRSRTSM 436
           + GTP CNQ  +   LI  +  N  +Q+ + +SM
Sbjct: 149 ESGTPFCNQNRVYTYLIKVVSANAEWQLPNGSSM 182


>SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 367 GFSQFTVEDFYETFMEVIQRV 429
           GFS   V+D+Y++F+EV ++V
Sbjct: 140 GFSHQAVKDYYQSFIEVAEKV 160


>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
          Length = 366

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 44  VENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNEDP 181
           VE    Q+E + ++Q++ E+ + E     G++EE   LE+   E+P
Sbjct: 91  VEEEPKQEEPVEEEQKQ-EEPVKEEPKQEGQVEEEPKLEEPVEEEP 135


>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 140 EELQTLEKEYNEDPIYLLKVKDLSSKYKSIRRTRPD 247
           EEL+ LEK   E+   L + K +  KY+   R  PD
Sbjct: 857 EELERLEKFREEETQKLRREKKVFEKYQKAARANPD 892


>SB_4406| Best HMM Match : NGF (HMM E-Value=6.8)
          Length = 405

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = +2

Query: 8   DASSSSGITGNTVENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNE---D 178
           D  S    +  T +  I    LIM  QREI +E +E++P        + L+ E N     
Sbjct: 273 DMKSPRATSARTADTDIR---LIMTSQREITREDAESLPNYQSYASQRMLQMENNNVSIA 329

Query: 179 PIYLLKVKDLSSKYKSIRR 235
           P +  KV     +  SI R
Sbjct: 330 PAFRSKVASPRKEMTSIYR 348


>SB_56020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/55 (23%), Positives = 31/55 (56%)
 Frame = +2

Query: 5   DDASSSSGITGNTVENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEY 169
           D+ +  + + G T++ S   +E+ + +   +EK +   IPL  +++ L+ L ++Y
Sbjct: 43  DNLAGKTTVRGTTIQGSTLPEEMRLYRYELVEKMLKAGIPL-AKVDVLRPLLEKY 96


>SB_41996| Best HMM Match : Tropomyosin (HMM E-Value=0.26)
          Length = 363

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 8   DASSSSGITGNTVENSINQDELIMKQQREIEKEIS-ETIPLVGEIEELQTLEKEYNE 175
           D  + S I  ++V+ S+  D+L  +QQR + KE   +   L  EI+ L+   ++Y E
Sbjct: 23  DEPNDSDIQSSSVDTSVLMDQL--EQQRSMNKEKERQKEYLSSEIKRLEEKMEDYKE 77


>SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)
          Length = 1461

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +1

Query: 280 YLERLLTD-KQEYDKFYEIA----KNSKDILVALGFSQFTVEDFYETFMEVIQRVGEHAG 444
           +LE+  T  K+EY    +I     KN  D+ V  G S   V+DFY+T    +Q + E  G
Sbjct: 105 WLEKAKTILKEEYGNSSDIINIYIKNIMDLPVITGTSPRKVKDFYKTLRFNVQSL-ETLG 163

Query: 445 STPDLIETVR 474
              D+   VR
Sbjct: 164 RLHDVCGNVR 173


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 280 YLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFT-VEDFYETFMEVIQRVGEHAG 444
           Y + LL  ++  DK  E    S          +FT    +YE F+ V +++G+HAG
Sbjct: 541 YQQHLLVAQELKDKMNESVALSNLGNFYSSCGEFTNAVPYYEKFLNVTRQLGDHAG 596


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,520,905
Number of Sequences: 59808
Number of extensions: 297468
Number of successful extensions: 968
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)