Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30929X
(560 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g28120.1 68414.m03445 expressed protein 51 5e-07
At1g04160.1 68414.m00406 myosin family protein contains Pfam pro... 32 0.23
At3g58840.1 68416.m06558 expressed protein 31 0.70
At5g46670.1 68418.m05751 CHP-rich zinc finger protein, putative ... 29 2.8
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi... 29 2.8
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 28 3.7
At3g60260.2 68416.m06736 phagocytosis and cell motility protein ... 28 4.9
At3g60260.1 68416.m06735 phagocytosis and cell motility protein ... 28 4.9
At1g80840.1 68414.m09484 WRKY family transcription factor simila... 28 4.9
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 27 6.5
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)... 27 6.5
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi... 27 6.5
At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containi... 27 6.5
At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1) id... 27 6.5
At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1) id... 27 6.5
At3g18420.1 68416.m02342 tetratricopeptide repeat (TPR)-containi... 27 8.6
>At1g28120.1 68414.m03445 expressed protein
Length = 306
Score = 51.2 bits (117), Expect = 5e-07
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 ADDASSSSGITGNTVENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNE-D 178
A+ A+S S I G N + ++ Q ++E + +P VG+ E L +L EY
Sbjct: 12 AEVAASISAIKGEEWGNCSSVED-----QPSFQEEEAAKVPYVGDKEPLSSLAAEYQSGS 66
Query: 179 PIYLLKVKDLSSKYKSIRRTRPDGNFSF 262
PI L K+K L S+Y IRRTR DGN F
Sbjct: 67 PILLEKIKILDSQYIGIRRTRGDGNCFF 94
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +1
Query: 256 FFRAFSYAYLERLLT--DKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETFMEVIQRV 429
FFR+F ++YLE +L D+ E D+ + + L LG++ FT EDF+ F+E + +
Sbjct: 93 FFRSFMFSYLEHILESQDRAEVDRIKVNVEKCRKTLQNLGYTDFTFEDFFALFLEQLDDI 152
>At1g04160.1 68414.m00406 myosin family protein contains Pfam
profiles: PF02736 myosin N-terminal SH3-like domain,
PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif, PF01843: DIL domain
Length = 1500
Score = 32.3 bits (70), Expect = 0.23
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 44 VENSINQDELIMKQQREIEKEISETIPLVGEIE--ELQTLEKEYNED 178
++N + E ++ ++RE K +SE +P++ E+ + + +EK NE+
Sbjct: 933 IQNKFKETEALLIKEREAAKTVSEVLPIIKEVPVVDQELMEKLTNEN 979
>At3g58840.1 68416.m06558 expressed protein
Length = 318
Score = 30.7 bits (66), Expect = 0.70
Identities = 13/44 (29%), Positives = 29/44 (65%)
Frame = +2
Query: 44 VENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNE 175
+E+ N+++ + ++ RE+++ + L GEIEE++ +E E N+
Sbjct: 29 IEDMENKNQELTRENRELKERLER---LTGEIEEMKDVEAEMNQ 69
>At5g46670.1 68418.m05751 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 332
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 537 DEGTP--LCNQKSLLVELIMKLHTNCFYQIRSRTSMFPYSLDYFHKS-FVKIFNGE 379
+E TP +C KS +LI C Y I R + FPY Y H S F+ I +G+
Sbjct: 150 EEKTPCQVCKYKSYNSKLICM---ECDYSICLRCATFPYKARYKHDSHFLTICDGK 202
>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
thaliana]
Length = 1505
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 62 QDELIMKQQREIEKEISETIPLVGEIE--ELQTLEKEYNEDPIYLLKVKDLSSK 217
+ E ++ ++RE K+I+ET P++ EI + + ++K NE+ V L K
Sbjct: 938 ETEALLIKEREAAKKIAETAPIIKEIPVVDQELMDKITNENEKLKSMVSSLEMK 991
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 35 GNTVENSINQDELIMKQQREIEKEISETIPLVGEIEE 145
GNT EN + + +Q +E ++E +++PLV E+++
Sbjct: 58 GNTQENGSSMEVKEEEQLQEPKEENQDSVPLVEEVQD 94
>At3g60260.2 68416.m06736 phagocytosis and cell motility protein
ELMO1-related contains weak similarity to ELMO1 [Mus
musculus] gi|16118551|gb|AAL14464
Length = 266
Score = 27.9 bits (59), Expect = 4.9
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -3
Query: 426 SLDYFHKSFVKIFNGELRKP*GDENIFRI-FCYFVKLIIFLLISQ*AFQICV*ERAKEKL 250
+L YF + F K F+G LRK GD +++ F I F+LI Q+ E K +
Sbjct: 136 NLLYFARKFPKSFHGLLRKQVGDRSVWEYPFAVAGINITFMLI-----QMLDLEAVKPRS 190
Query: 249 PSGRVRLMLLYFEDKSFTL 193
G L L + +F L
Sbjct: 191 IVGETFLRFLSVNESAFDL 209
>At3g60260.1 68416.m06735 phagocytosis and cell motility protein
ELMO1-related contains weak similarity to ELMO1 [Mus
musculus] gi|16118551|gb|AAL14464
Length = 266
Score = 27.9 bits (59), Expect = 4.9
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -3
Query: 426 SLDYFHKSFVKIFNGELRKP*GDENIFRI-FCYFVKLIIFLLISQ*AFQICV*ERAKEKL 250
+L YF + F K F+G LRK GD +++ F I F+LI Q+ E K +
Sbjct: 136 NLLYFARKFPKSFHGLLRKQVGDRSVWEYPFAVAGINITFMLI-----QMLDLEAVKPRS 190
Query: 249 PSGRVRLMLLYFEDKSFTL 193
G L L + +F L
Sbjct: 191 IVGETFLRFLSVNESAFDL 209
>At1g80840.1 68414.m09484 WRKY family transcription factor similar
to WRKY transcription factor GB:BAA87058 GI:6472585 from
[Nicotiana tabacum]
Length = 302
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 5 DDASSSSGITGNTVENSINQDELIMKQQREIEKEISETIPLV 130
+DA S + I G + +S +QDE + K+QRE E + E + V
Sbjct: 92 EDAFSCAVIGGVSESSSTDQDEYLCKKQRE-ETVVKEKVSRV 132
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 471 NCFYQIRSRTSMFPYSLDYFHKS-FVKIFNGE 379
+C Y I R + FPY Y H S F+ I NG+
Sbjct: 536 DCDYSICFRCATFPYMARYKHDSHFLTISNGK 567
>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
family protein similar to SP|P41972 Isoleucyl-tRNA
synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS)
{Staphylococcus aureus}; contains Pfam profile PF00133:
tRNA synthetases class I (I, L, M and V)
Length = 1093
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 205 FVFEIQKH*TNASRWQFFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDI 354
FVFE+ K T +W F A + +RLL + E +K E+A+N K I
Sbjct: 921 FVFEL-KWPTLNEQW-LSFPAEDVLFWQRLLELRTEVNKVLELARNEKMI 968
>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 990
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 311 SCLSVSKRSKYAYENARKKNCHRDAFV 231
SCL+ ++ + + NA K NC D FV
Sbjct: 629 SCLTALEQGRQIHANALKLNCTNDPFV 655
>At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 763
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 271 SYAYLERLLTDKQEYDKFYEIAK--NSKDILVALGFSQFTVED 393
SY + + +K+E+DK EI K K++ GFS V D
Sbjct: 679 SYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDVGD 721
>At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1)
identical to putative DNA repair protein XRCC1
[Arabidopsis thaliana] GI:11181954; contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 353
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 408 KSFVKIFNGELRKP*GDENIFRIFC 334
KS+ KI+ EL KP DE+ R+ C
Sbjct: 302 KSWKKIYEAELAKPGEDESTSRVAC 326
>At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1)
identical to putative DNA repair protein XRCC1
[Arabidopsis thaliana] GI:11181954; contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 353
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 408 KSFVKIFNGELRKP*GDENIFRIFC 334
KS+ KI+ EL KP DE+ R+ C
Sbjct: 302 KSWKKIYEAELAKPGEDESTSRVAC 326
>At3g18420.1 68416.m02342 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile: PF00515 tetratricopeptide
repeat domain (TPR domain)
Length = 316
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 382 TVEDFYETFMEVIQRVGEHAGSTPDLIETVRMELHDKFNK 501
T E+ E + I + E STP+ +ET+R L K K
Sbjct: 92 TYEEVKEEKLSEITPLSELLDSTPEAVETLRSLLQQKLEK 131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,187,331
Number of Sequences: 28952
Number of extensions: 216848
Number of successful extensions: 695
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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