Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30928X
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    56   4e-09
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    48   7e-07
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    37   0.002
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    36   0.004
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    27   1.5  
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    27   1.5  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   2.0  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    26   2.6  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   4.5  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.0  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   6.0  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   6.0  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   7.9  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   7.9  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 55.6 bits (128), Expect = 4e-09
 Identities = 25/61 (40%), Positives = 41/61 (67%)
 Frame = +2

Query: 242 QLEQLEILNLANNNIQELPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNN 421
           +LE LEIL+++ N I++LP S  +L  L++L++S N+L+ LP      P LEIL +  N+
Sbjct: 96  RLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKIENNH 155

Query: 422 L 424
           +
Sbjct: 156 I 156



 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 29/76 (38%), Positives = 43/76 (56%)
 Frame = +2

Query: 251 QLEILNLANNNIQELPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNE 430
           +L  LN+ +N ++E P SL  L  L IL++S NK+  LP  FG+   L++L ++ N L E
Sbjct: 76  RLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFE 135

Query: 431 KVLPGNFFIMDSLRAL 478
             LP     M +L  L
Sbjct: 136 --LPTYIAHMPNLEIL 149



 Score = 37.1 bits (82), Expect = 0.001
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +2

Query: 263 LNLANNNIQELPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLP 442
           L L +N I+ +   +    +LR LN+  N L   P        LEILD++ N +  K LP
Sbjct: 57  LALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKI--KQLP 114

Query: 443 GNFFIMDSLRAL 478
            +F  + +L+ L
Sbjct: 115 ESFGALMNLKVL 126


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 48.0 bits (109), Expect = 7e-07
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
 Frame = +2

Query: 245 LEQLEILNLANNNIQEL-PVSLSSLPK--LRILNVSLNKLYNLPRGFGSFPVLEILDLTY 415
           L QLE+LN++ N+I EL P+  S L +  L+ LN++ NKL+ LP        L  LDL+Y
Sbjct: 475 LRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSY 534

Query: 416 NN 421
           NN
Sbjct: 535 NN 536



 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +2

Query: 239 SQLEQLEILNLANNNIQELPVSLSSLPKLRILNVSLNKLYN-LPRGFGSFPVLEILDLTY 415
           ++L QLE LN ++N + ++   + SL KL+ L +  N L N LP+  G    LE +DL+Y
Sbjct: 545 TELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSY 604

Query: 416 N 418
           N
Sbjct: 605 N 605



 Score = 33.9 bits (74), Expect = 0.013
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +2

Query: 254 LEILNLANNNIQELPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNE 430
           L+ LN+ANN +  LP S   L  L  L++S N     P        LE L+ ++N L++
Sbjct: 504 LKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQ 562



 Score = 29.1 bits (62), Expect = 0.37
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 245 LEQLEILNLANNNIQELPVSLSSLPKLRILNVSLNKL 355
           L+ LE ++L+ N I  +  SLS  PKL  +NV+ N L
Sbjct: 594 LKNLETIDLSYNAITNI-ASLSECPKLNSINVACNLL 629



 Score = 27.9 bits (59), Expect = 0.85
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 254  LEILNLANNNIQELPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNL 424
            L+ L ++ N +  L +S ++   L  L  + N+L + P+       L  LD++ NNL
Sbjct: 856  LKHLFVSGNELANLSISSTAQVLLETLYANGNRLSSFPKNEALSKSLRFLDISTNNL 912



 Score = 27.1 bits (57), Expect = 1.5
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = +2

Query: 251 QLEILNLANNNIQELPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNE 430
           +L+ L+++NN        +++L +L +LN+S N +Y L       P++    L+ N+L E
Sbjct: 454 KLKRLDISNNLRSPRGKPITALRQLEVLNMSRNDIYELD------PLI-FSGLSRNSLKE 506

Query: 431 KVLPGN--FFIMDSLRAL 478
             +  N  FF+  S R L
Sbjct: 507 LNIANNKLFFLPHSTRYL 524



 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/78 (21%), Positives = 38/78 (48%)
 Frame = +2

Query: 245 LEQLEILNLANNNIQELPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNL 424
           L  +E + +  N+   +  ++S++  L+ L+ +  ++  +    G    L  LDL  NN+
Sbjct: 682 LVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHANNI 741

Query: 425 NEKVLPGNFFIMDSLRAL 478
             K+ P   + + SL+ +
Sbjct: 742 --KIFPEEVWQVSSLKVV 757


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +2

Query: 245 LEQLEILNLANNNIQELPVSLSSLPKLRILNVSLNKLYNLPRGFG-SFPVLEILDLTYNN 421
           L+ L  L+L+ N + E+P +L  LP+L  LN++ NK+      +  S   L+IL L+ N+
Sbjct: 355 LQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNH 414

Query: 422 L 424
           L
Sbjct: 415 L 415


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 24/61 (39%), Positives = 34/61 (55%)
 Frame = +2

Query: 239 SQLEQLEILNLANNNIQELPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYN 418
           S L +LE L L NN I+E+   +SSL  L +L +  NKL NL     S P++ +  L  +
Sbjct: 732 SNLHRLEELLLGNNEIEEIE-EISSLQNLMVLQLDNNKLTNLK---ASQPMIHLRILRIS 787

Query: 419 N 421
           N
Sbjct: 788 N 788


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 476 KHGDCP**RSSQVILFHSNYCMLDPIS 396
           +HG  P   SS ++ ++ NYC   P+S
Sbjct: 210 EHGSSPLESSSGLVYYNRNYCSTSPLS 236


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 399 ISSTGKEPKPLGKLYSLFNETLRILNLGSDDK 304
           I STG++PK LGK Y    E + I N+  D K
Sbjct: 208 IFSTGRQPKILGKPYDEMMEAI-IANVNFDRK 238


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 341 SLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPG 445
           S  KL+++ + FG F VLE +   Y  L E+ + G
Sbjct: 81  SNEKLWSIGKVFGDFYVLEYIKCKYPRLPEEAVHG 115


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 161 FQAYFSGEHHSSVPKPQQNLCSACCTSQLEQ 253
           FQ YF+GE +S++P     L  A    Q E+
Sbjct: 362 FQGYFAGEKYSAIPNAVAGLYDAEDAVQTER 392


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +2

Query: 245 LEQLEILNLANNNIQELPVSLSSLPKLRILNVSLNKL 355
           LE LEIL+++NN I+ L   L+ L  L  L  S N+L
Sbjct: 236 LENLEILDVSNNMIKHLSY-LAGLKNLVELWASNNEL 271


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 66 SCLCLEYKILGVDDSLSNRW 7
          SC CL  ++LG+ +   ++W
Sbjct: 12 SCECLNIRVLGIPNETKHQW 31


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 423 KLLYVRSNISSTGKEPKPLGKLYSLFNETLRILNLGSDDKLTGSS 289
           ++L +  N S+   E     KLYSLF   +++ ++  D+K   SS
Sbjct: 318 QILEMIENFSAINSELLESTKLYSLFTLLVKLSDIPLDEKYDFSS 362


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 278 NNIQELPVSLSSLPKLRILNVSLNKL 355
           +++Q  PVS  S+ K R++  S+N+L
Sbjct: 503 DSVQSFPVSFHSICKGRLIRDSINRL 528


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 189 TRLYLSHNKISVVPAALANLSN 254
           T LY++HN ++ +P  +  L N
Sbjct: 184 TELYINHNNLTRLPPEIGKLKN 205


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 212 QNLCSACCTSQLEQLEILNLANNNIQELPVSLSSLPKLRILNVSLN 349
           + LCS C T   +  E + +A  N+    V + S P L    V L+
Sbjct: 473 ETLCSLCVTLINDTFEPVRMATTNVLATLVQIFSQPVLSKYIVGLD 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,434
Number of Sequences: 5004
Number of extensions: 37761
Number of successful extensions: 122
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)