Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30923
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    26   5.0  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    26   6.6  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    26   6.6  
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces...    26   6.6  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    26   6.6  

>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 537 LLISRVDLVLLRIRTASMRRCLLPLMTYP 451
           LL+S+  + + ++R A   +CLL  MT+P
Sbjct: 513 LLLSKEKVQINKVRCAESLQCLLQRMTHP 541


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 4   QSKTVQITNIKKRARNQKIP 63
           + KTVQ+ NIKKR+  + IP
Sbjct: 209 RDKTVQVWNIKKRSAVRTIP 228


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 198 EKGKEHEVQQAQSKLCKDNKN 260
           +KG+E  ++    KLCK NKN
Sbjct: 313 QKGREAPLRSGFEKLCKRNKN 333


>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 466 WEQTSTHGSSTYPQKNQIYSADEK 537
           ++ T+ H    +P+K +IY AD K
Sbjct: 117 YDYTACHEDPVFPKKEKIYKADYK 140


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 565 SSLLNAARRASHQPS--RSGSFADTYCFHASMSAPTHDISNSF 443
           SSLL+    +SHQPS  + G F+       S  + T+D   +F
Sbjct: 29  SSLLHTQNESSHQPSLNKLGGFSSASLNFNSSRSSTNDDQQTF 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,997
Number of Sequences: 5004
Number of extensions: 42970
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)