Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30923
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0377 + 17086775-17088310                                         74   1e-13
08_02_0974 + 23200053-23200167,23200184-23200665                       36   0.034
01_01_1172 - 9324919-9325071,9325425-9325570,9326986-9327039,932...    31   0.97 
11_06_0563 - 25018219-25018658,25020381-25020459                       29   3.0  
09_01_0033 + 546670-546885,547497-547637,548025-548291                 29   3.9  
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873...    29   3.9  
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686     29   5.2  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    29   5.2  

>09_04_0377 + 17086775-17088310
          Length = 511

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 31/49 (63%), Positives = 41/49 (83%)
 Frame = +2

Query: 371 FVADGKRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKRTR 517
           +V  GKRIPRRGE+GL+++EI  +E +GYVMSGSRH+RM A+RIRK  +
Sbjct: 410 YVQQGKRIPRRGEVGLSAEEIQKFEDLGYVMSGSRHQRMNAIRIRKENQ 458


>08_02_0974 + 23200053-23200167,23200184-23200665
          Length = 198

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +2

Query: 452 GYVMSGSRHRRMEAVRIRKRTR 517
           GYVMSGSRH R+ AVR+RK  +
Sbjct: 124 GYVMSGSRHARITAVRLRKENQ 145


>01_01_1172 -
           9324919-9325071,9325425-9325570,9326986-9327039,
           9327647-9327866,9327976-9328083
          Length = 226

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/29 (51%), Positives = 23/29 (79%)
 Frame = +3

Query: 543 LAAFSKDERNKRENAILSQFRDVLKARQK 629
           LA F+ DE NKRENA+L +F  V++A+++
Sbjct: 24  LARFAVDEHNKRENALL-EFVRVVEAKEQ 51


>11_06_0563 - 25018219-25018658,25020381-25020459
          Length = 172

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +2

Query: 422 SDEIASYEAVGYVMSGSRHRRMEAVRIRKRTRSTRLMRSAPRRI*QGRKEQTGKR 586
           ++E A+ EA G V+ GS        RIR+R  S+R   +A   +  G   ++G+R
Sbjct: 95  NNEWANLEAAGLVLPGSGSNGPRPTRIRQRRASSRPDPAAAGLVPPGYGAKSGRR 149


>09_01_0033 + 546670-546885,547497-547637,548025-548291
          Length = 207

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 534 EARLAAFSKDERNKRENAILSQFRDV 611
           E +LA FS DER   E A++  FR+V
Sbjct: 161 EVKLAEFSNDERMLTEAAVMVDFREV 186


>06_03_0084 -
           16386962-16387033,16387124-16387175,16387252-16387313,
           16387509-16387543,16387637-16387679,16388610-16388692,
           16388829-16388917,16390415-16390681,16391370-16391446,
           16391546-16391677,16391802-16391870,16392464-16392529,
           16392603-16392773,16392848-16392916,16393005-16393086,
           16393175-16393219,16393535-16393659,16394271-16394525,
           16396561-16396722
          Length = 651

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 377 ADGKRIPRRGEIGLTSDEIASYEAVGYVMS 466
           ++GK I RRG   +TSD IA  E +  ++S
Sbjct: 543 SEGKVIQRRGRFQVTSDSIAQKEVISRLIS 572


>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
          Length = 959

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 481 THGSSTYPQKNQIYSADEKRASP-HLARTKGTNGKTLSLASLEMSSKP-DKNEKLSTN*I 654
           T G +T P     YS   +   P H   T G       LAS  +++K  D +E++     
Sbjct: 727 TEGINTLPPVKHTYSLRSRGRPPSHNKITSGMIHGEQDLASDNIANKKTDCHERVQEAVS 786

Query: 655 SCAPAETP 678
           SC PAE P
Sbjct: 787 SCLPAEEP 794


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +1

Query: 445 SCWICHEWEQTSTHGSSTYPQKNQIYSADEKRASPHLARTKGTNGKTLSLASLEMSSKPD 624
           SC    E    +   +S+ P+K +  S+  K+A+     +KG N   +SL  +   S   
Sbjct: 700 SCLSTSESNADTYQTNSSQPKKAKFSSSQSKQAATK-TNSKGDNSSGVSLIEVLRRSSST 758

Query: 625 KNEKLSTN*ISCAP-AETPLNQGITRLKMVRRY 720
            +++  T   SCA   E+      +  K+ RR+
Sbjct: 759 SDKQEYTRQESCAVITESQAAHQFSAFKLSRRF 791


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,540,668
Number of Sequences: 37544
Number of extensions: 283122
Number of successful extensions: 757
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)