Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30923
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55786| Best HMM Match : DUF926 (HMM E-Value=0)                      82   4e-16
SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)                 33   0.25 
SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)           33   0.25 
SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_38430| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  

>SB_55786| Best HMM Match : DUF926 (HMM E-Value=0)
          Length = 137

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 38/49 (77%), Positives = 43/49 (87%)
 Frame = +2

Query: 371 FVADGKRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKRTR 517
           +V  GKRIPRRGEIGLTSDEIA++E  GYVMSGSRHRRMEAVR+RK  +
Sbjct: 48  YVKAGKRIPRRGEIGLTSDEIATFEDQGYVMSGSRHRRMEAVRLRKENQ 96



 Score = 35.1 bits (77), Expect = 0.061
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 543 LAAFSKDERNKRENAILSQFRDVLKARQK 629
           LA F+ +ER+KREN ILS FR+++  + K
Sbjct: 106 LAMFNYEERSKRENKILSDFRELIHQKTK 134


>SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)
          Length = 278

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 154 VPAVT---LVQVKKRYGWKKEKSMKFNRHNQNYV 246
           +P VT   L QVKK Y W   +S K N+HN  +V
Sbjct: 232 LPEVTPEALEQVKKNYAWVAGESQKLNKHNPGHV 265


>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
          Length = 265

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 154 VPAVT---LVQVKKRYGWKKEKSMKFNRHNQNYV 246
           +P VT   L QVKK Y W   +S K N+HN  +V
Sbjct: 142 LPEVTPEALEQVKKNYAWVAGESQKLNKHNPGHV 175


>SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 803

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 496 TYPQKNQIYSADEKRASPHLARTKGTNGKTLSLASLEMSSKP-DKNEKL 639
           T PQ   + +AD     PHL   +G  G   SL   ++ SKP DK++ L
Sbjct: 643 TLPQGAILVTADVVGLYPHLPHDEGLEGLKASLDKRDLYSKPTDKHQYL 691


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +1

Query: 274 HWSRGSCDRQWS 309
           HWSRG  DRQWS
Sbjct: 159 HWSRGDDDRQWS 170


>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1240

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 318 TLRAPLPIARASGPMISEDNSYCLYIVLIVPVELHALFLFPPISL 184
           T+++P P+     P+ +     CL+ +   P E H L  F P +L
Sbjct: 559 TIKSPHPLLYTHAPLCNPQKKPCLFNIKWDPCEYHNLAAFMPNTL 603


>SB_38430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +1

Query: 460 HEWEQT--STHGSSTYPQKNQIYSADEKRASPHLAR 561
           H W++        STY Q N+I S D +  +PH  R
Sbjct: 319 HPWDRQPDGQKKQSTYSQSNKIISGDRQEDNPHSVR 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,026,096
Number of Sequences: 59808
Number of extensions: 326505
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)