Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30923
         (746 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4072|AAF56669.1|  463|Drosophila melanogaster CG6066-PA...    93   4e-19
M23221-1|AAA28540.1| 2038|Drosophila melanogaster fsh protein.         29   6.7  
BT015309-1|AAT94537.1|  880|Drosophila melanogaster AT07233p pro...    29   6.7  
AY089554-1|AAL90292.1|  201|Drosophila melanogaster LD38749p pro...    29   6.7  
AE013599-492|AAF59197.3|  877|Drosophila melanogaster CG30497-PA...    29   6.7  

>AE014297-4072|AAF56669.1|  463|Drosophila melanogaster CG6066-PA
           protein.
          Length = 463

 Score = 93.1 bits (221), Expect = 4e-19
 Identities = 46/85 (54%), Positives = 59/85 (69%)
 Frame = +2

Query: 263 SSEIIGPEARAIGSGALSVREXXXXXXXXXXXXXXXFVADGKRIPRRGEIGLTSDEIASY 442
           + E +GP  R    G+L+ ++               ++A+GKRIPRRGEIGLTSDEIA++
Sbjct: 338 NDEDVGPSLRP--GGSLNQKDFGKALLPGEGAAMAAYIAEGKRIPRRGEIGLTSDEIANF 395

Query: 443 EAVGYVMSGSRHRRMEAVRIRKRTR 517
           E+VGYVMSGSRHRRMEAVRIRK  +
Sbjct: 396 ESVGYVMSGSRHRRMEAVRIRKENQ 420



 Score = 40.7 bits (91), Expect = 0.002
 Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +3

Query: 507 KEPDLLG**EAR-LAAFSKDERNKRENAILSQFRDVLKAR 623
           KE  L    E R LA FSK+ER KREN ILSQF+D++ ++
Sbjct: 417 KENQLYSADEKRALAMFSKEERQKRENKILSQFKDMIHSK 456


>M23221-1|AAA28540.1| 2038|Drosophila melanogaster fsh protein.
          Length = 2038

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -1

Query: 452  QQLHRRQFHQM*VQFLLCVEFSFRLPQKQPWQHLLQ---VVEHHQA 324
            QQ H++Q HQ   Q L   +   +  Q+Q  QHL Q     +HHQA
Sbjct: 1524 QQQHQQQHHQQQQQQLTQQQLQQQQQQQQQQQHLQQQQHQQQHHQA 1569


>BT015309-1|AAT94537.1|  880|Drosophila melanogaster AT07233p
           protein.
          Length = 880

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 20/90 (22%), Positives = 37/90 (41%)
 Frame = +1

Query: 469 EQTSTHGSSTYPQKNQIYSADEKRASPHLARTKGTNGKTLSLASLEMSSKPDKNEKLSTN 648
           +Q+   G    PQ+ QI+     R S +       N   ++  S  MSSK   N  +S+N
Sbjct: 75  QQSQRSGKKAKPQRQQIFLQSLPRDSSNYRSNSFRNSIDINSNSSNMSSKSSSN--MSSN 132

Query: 649 *ISCAPAETPLNQGITRLKMVRRYIIGVAI 738
             + +     L+ G+ ++         +A+
Sbjct: 133 SSNISDTLATLDSGVGKINPAELLTAALAV 162


>AY089554-1|AAL90292.1|  201|Drosophila melanogaster LD38749p
           protein.
          Length = 201

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 20/90 (22%), Positives = 37/90 (41%)
 Frame = +1

Query: 469 EQTSTHGSSTYPQKNQIYSADEKRASPHLARTKGTNGKTLSLASLEMSSKPDKNEKLSTN 648
           +Q+   G    PQ+ QI+     R S +       N   ++  S  MSSK   N  +S+N
Sbjct: 72  QQSQRSGKKAKPQRQQIFLQSLPRDSSNYRSNSFRNSIDINSNSSNMSSKSSSN--MSSN 129

Query: 649 *ISCAPAETPLNQGITRLKMVRRYIIGVAI 738
             + +     L+ G+ ++         +A+
Sbjct: 130 SSNISDTLATLDSGVGKINPAELLTAALAV 159


>AE013599-492|AAF59197.3|  877|Drosophila melanogaster CG30497-PA,
           isoform A protein.
          Length = 877

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 20/90 (22%), Positives = 37/90 (41%)
 Frame = +1

Query: 469 EQTSTHGSSTYPQKNQIYSADEKRASPHLARTKGTNGKTLSLASLEMSSKPDKNEKLSTN 648
           +Q+   G    PQ+ QI+     R S +       N   ++  S  MSSK   N  +S+N
Sbjct: 72  QQSQRSGKKAKPQRQQIFLQSLPRDSSNYRSNSFRNSIDINSNSSNMSSKSSSN--MSSN 129

Query: 649 *ISCAPAETPLNQGITRLKMVRRYIIGVAI 738
             + +     L+ G+ ++         +A+
Sbjct: 130 SSNISDTLATLDSGVGKINPAELLTAALAV 159


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,823,812
Number of Sequences: 53049
Number of extensions: 478586
Number of successful extensions: 1558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)