Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30923
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    75   4e-14
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    30   1.5  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    30   1.5  
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    29   2.6  
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    28   8.1  
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr...    28   8.1  
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    28   8.1  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 34/49 (69%), Positives = 40/49 (81%)
 Frame = +2

Query: 371 FVADGKRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKRTR 517
           + A G+RIPRRGEIGL+S EIA YE VGYVMSGSRH+ MEA R+RK  +
Sbjct: 416 YAARGERIPRRGEIGLSSGEIAEYEKVGYVMSGSRHKAMEATRLRKENQ 464


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 470 SRHRRMEAVRIRKRTRSTRLMRSAPRRI*QGRKEQTGK 583
           SR R   A R+R+++RS R  R  PR++ + R     K
Sbjct: 222 SRSRSRSAERLRRKSRSPRRSREEPRKMSRSRSRSADK 259


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 470 SRHRRMEAVRIRKRTRSTRLMRSAPRRI*QGRKEQTGK 583
           SR R   A R+R+++RS R  R  PR++ + R     K
Sbjct: 222 SRSRSRSAERLRRKSRSPRRSREEPRKMSRSRSRSADK 259


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = +1

Query: 448 CWICHEWEQTSTHGSSTYPQKNQIYSADEKRASPHLARTKGTNGKTLSLASLEMSSKPDK 627
           C IC  +++ +    +  P +N  +  DE     H ++ +    +TLS    E   + +K
Sbjct: 528 CLICQTYQKLT---GNVRPARNVEFCDDELEKIYHWSQKEEDLNRTLSREEFEELVREEK 584

Query: 628 NEKLSTN*ISCAPAETPLNQGITRL 702
           N+K   N +S A     LNQ   R+
Sbjct: 585 NKKWKNNDLS-AEETAMLNQKELRI 608


>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform c protein.
          Length = 1576

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 526  PSRSGSFADTYCFHASMS-APTHDISNSFIGGNFIRCKSNFSS 401
            P+RS +  +T CF A+   +PT D+ N     +  R  +N +S
Sbjct: 1503 PTRSSTVPETMCFSAAKKLSPTEDVKNGNENSSPTRTATNGTS 1545


>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform b protein.
          Length = 1610

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 526  PSRSGSFADTYCFHASMS-APTHDISNSFIGGNFIRCKSNFSS 401
            P+RS +  +T CF A+   +PT D+ N     +  R  +N +S
Sbjct: 1537 PTRSSTVPETMCFSAAKKLSPTEDVKNGNENSSPTRTATNGTS 1579


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform a protein.
          Length = 1595

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 526  PSRSGSFADTYCFHASMS-APTHDISNSFIGGNFIRCKSNFSS 401
            P+RS +  +T CF A+   +PT D+ N     +  R  +N +S
Sbjct: 1522 PTRSSTVPETMCFSAAKKLSPTEDVKNGNENSSPTRTATNGTS 1564


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,640
Number of Sequences: 27780
Number of extensions: 240601
Number of successful extensions: 689
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)