Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30923
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.0  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   9.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.3  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 466 THDISNSFIGGNFIRCKSNFSSAWNSL 386
           +++ISN+F G N ++   N+   W  L
Sbjct: 270 SYEISNAFRGNNNLKWLVNWGEQWGFL 296


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 690 YNPFEDGTPLHYW 728
           +NP  D  P+H W
Sbjct: 530 WNPLTDTVPIHTW 542


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 232 NQNYVKTIRIIFGDHWSRGS 291
           NQ   +T+RII+G   + G+
Sbjct: 196 NQTVAETVRIIYGGSVTAGN 215


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 321  LTLRAPLPIARASGPMISEDNS 256
            L LR PL + + + PMI +DN+
Sbjct: 1048 LNLR-PLSMEKGTRPMIPDDNT 1068


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,630
Number of Sequences: 438
Number of extensions: 3014
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)