Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30923
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02720.1 68417.m00368 expressed protein temporary automated f...    73   2e-13
At3g12490.2 68416.m01555 cysteine protease inhibitor, putative /...    32   0.35 
At3g12490.1 68416.m01554 cysteine protease inhibitor, putative /...    32   0.35 
At1g33350.1 68414.m04127 pentatricopeptide (PPR) repeat-containi...    28   5.7  
At5g05110.1 68418.m00542 cysteine protease inhibitor, putative /...    28   7.6  

>At4g02720.1 68417.m00368 expressed protein temporary automated
           functional assignment
          Length = 422

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 31/49 (63%), Positives = 40/49 (81%)
 Frame = +2

Query: 371 FVADGKRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKRTR 517
           +V  GKRIPRRGE+GL ++EI  +E +GYVMSGSRH+RM A+RIRK  +
Sbjct: 316 YVQQGKRIPRRGEVGLNAEEIQKFEDLGYVMSGSRHQRMNAIRIRKENQ 364


>At3g12490.2 68416.m01555 cysteine protease inhibitor, putative /
           cystatin, putative similar to PRLI-interacting factor M
           [Arabidopsis thaliana] GI:11139270, cysteine proteinase
           inhibitor [Brassica rapa] GI:762785; contains Pfam
           profile PF00031: Cystatin domain
          Length = 201

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 15/29 (51%), Positives = 23/29 (79%)
 Frame = +3

Query: 543 LAAFSKDERNKRENAILSQFRDVLKARQK 629
           LA F+ DE NK+ENA+L +F  V+KA+++
Sbjct: 22  LARFAVDEHNKKENALL-EFARVVKAKEQ 49


>At3g12490.1 68416.m01554 cysteine protease inhibitor, putative /
           cystatin, putative similar to PRLI-interacting factor M
           [Arabidopsis thaliana] GI:11139270, cysteine proteinase
           inhibitor [Brassica rapa] GI:762785; contains Pfam
           profile PF00031: Cystatin domain
          Length = 201

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 15/29 (51%), Positives = 23/29 (79%)
 Frame = +3

Query: 543 LAAFSKDERNKRENAILSQFRDVLKARQK 629
           LA F+ DE NK+ENA+L +F  V+KA+++
Sbjct: 22  LARFAVDEHNKKENALL-EFARVVKAKEQ 49


>At1g33350.1 68414.m04127 pentatricopeptide (PPR) repeat-containing
           protein contains multiple Pfam domains: PF01535: PPR
           repeat
          Length = 538

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = -2

Query: 679 VVSLLGHKIFNSY*VSRFCLALRTSLNWLRIAFSRL-FLSSLLNAARRASHQPSRSGSFA 503
           +VS L H  F  + + RFC     +L++ R  F R  F ++ L AA   ++  S     +
Sbjct: 48  IVSGLSHSHFLCFKLLRFCTLRLCNLSYARFIFDRFSFPNTHLYAAVLTAYSSSLPLHAS 107

Query: 502 DTYCFHASMSAPTHDISNSFIGGNFIRCKSNFSSAWNS 389
             + F   M   +    N FI    ++     SSA+++
Sbjct: 108 SAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFST 145


>At5g05110.1 68418.m00542 cysteine protease inhibitor, putative /
           cystatin, putative similar to cysteine proteinase
           inhibitor [Glycine max] GI:1944342; contains Pfam
           profile PF00031: Cystatin domain
          Length = 232

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 543 LAAFSKDERNKRENAILSQFRDVLKARQK 629
           +A F+  E N+RENA+L   R VLKA ++
Sbjct: 64  IALFAVQEHNRRENAVLELAR-VLKATEQ 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,569,359
Number of Sequences: 28952
Number of extensions: 226332
Number of successful extensions: 683
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)