Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30920X
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900...    28   2.5  
07_03_0512 - 18954515-18955972                                         28   3.3  
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756...    28   3.3  
05_04_0310 + 20114415-20117819                                         27   5.8  
05_04_0069 - 17639386-17641380                                         27   5.8  
01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847     27   5.8  
12_02_1191 + 26826884-26827345                                         27   7.7  
08_01_0022 - 163512-163817,165963-166032,166074-166151,166399-16...    27   7.7  

>01_04_0143 +
           16689471-16689498,16689687-16689818,16689974-16690013,
           16690214-16690280,16690349-16690431,16690755-16690821,
           16692741-16692821,16693696-16693791,16694172-16694198
          Length = 206

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 138 CYFFENSPLNKSHQI*RCMLS-SLPVWLWVC 227
           CY  E + L++ HQI  C ++ S  V +W C
Sbjct: 71  CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101


>07_03_0512 - 18954515-18955972
          Length = 485

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 400 PTGDNGRNVSNTVR---LMPSVRSLQRGCP*IGRNTRCSAADLKSVC 269
           P G +G+   + V    L  +VRSL      +GR  R  AA++K+VC
Sbjct: 408 PLGVDGKRRDSFVEAAELERAVRSLMDDASEVGRKVREKAAEMKAVC 454


>06_03_1344 -
           29472139-29473292,29474478-29475386,29475504-29475618,
           29476017-29476218,29477177-29477296,29477431-29477582,
           29478177-29478461
          Length = 978

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 263 WSTSDSMSLPRPAHPEPDRQR*EHTPS 183
           W  SDS   P+P  PE  RQ+ E +P+
Sbjct: 589 WHYSDSRFPPKPTTPEQGRQQSEPSPT 615


>05_04_0310 + 20114415-20117819
          Length = 1134

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 166 INRIKYEGVCSHRCLSGSGCAGRGRLML 249
           +N+++ E  C  RCL G G  GRG   L
Sbjct: 48  LNQLRAEAGCVERCLGGGG-GGRGNCEL 74


>05_04_0069 - 17639386-17641380
          Length = 664

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 62  DESLLEVAFCASVCKGSTFDIRQTHLL-FFREFATK*IASNMKVYALIVAC 211
           + S ++VA C ++  G + + + +  L  FREF  + I  N+  +  IVAC
Sbjct: 216 ESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVAC 266


>01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847
          Length = 943

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = -2

Query: 276 PSASLVDV**HESSSASTPRARQATMRAYTFIFDAIYLVANSRKNNKCV*RMSKVLPLH 100
           PS  + DV  H   S   P +R       TF+ D   L  +SRKNN C+  M K + L+
Sbjct: 504 PSLRIFDVS-HNLLSGDLPNSRFFDNIPETFLSDNQGL-CSSRKNNSCIAIMPKPIVLN 560


>12_02_1191 + 26826884-26827345
          Length = 153

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 406 RRPTGDNGRNVSNTVRLMPSV 344
           RRP GD+G N + T  LM  V
Sbjct: 76  RRPDGDDGENKATTTTLMKDV 96


>08_01_0022 -
           163512-163817,165963-166032,166074-166151,166399-166439,
           166830-166880,166997-167065,167924-168019,169217-169328,
           169629-169774,169965-170015,170171-170281,170378-170447,
           172496-172935
          Length = 546

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 251 DSMSLPRPAHPEPDRQR*EHTPSYLMRFI*WRILE 147
           +S S PRP HPE D    E  P  + R +  RILE
Sbjct: 10  ESSSPPRP-HPEADMVNKEKDPEEMKRKLKERILE 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,162,199
Number of Sequences: 37544
Number of extensions: 233252
Number of successful extensions: 661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)