Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30920X
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                 32   0.16 
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)               32   0.16 
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)           28   3.4  
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_23592| Best HMM Match : Papilloma_E5 (HMM E-Value=2.7)              27   4.5  
SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)              27   4.5  
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)             27   6.0  
SB_25895| Best HMM Match : Transposase_5 (HMM E-Value=0.05)            27   6.0  
SB_25847| Best HMM Match : Methuselah_N (HMM E-Value=0.48)             27   6.0  
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)                   27   6.0  
SB_9381| Best HMM Match : TAF4 (HMM E-Value=2.9)                       27   6.0  
SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 269

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +1

Query: 184 EGVCSHRCLSGSGCAGRGRLMLSDVDQG---CRRT 279
           +  C HRC+ G  C GR   + SD  +G   C RT
Sbjct: 174 QSCCGHRCVFGKSCYGRSCDLTSDCSEGESCCHRT 208


>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
          Length = 191

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +1

Query: 184 EGVCSHRCLSGSGCAGRGRLMLSDVDQG---CRRT 279
           +  C HRC+ G  C GR   + SD  +G   C RT
Sbjct: 96  QSCCGHRCVFGKSCYGRSCDLTSDCSEGESCCHRT 130


>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
          Length = 280

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 181 YEGVCSHRCLSGSGCAGRGRLML 249
           +EGVC+H  +   G  G GR+ML
Sbjct: 63  HEGVCNHLSMMAPGKHGTGRVML 85


>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 106 RQYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLS 213
           R + RH ++   +F R+ H  NR++Y+G  ++ C++
Sbjct: 367 RSHVRHEAS---LFGRMNHYENRVEYKGFTANICIA 399


>SB_23592| Best HMM Match : Papilloma_E5 (HMM E-Value=2.7)
          Length = 165

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 303 RAAVRQT*SPSASLVDV**HESSSASTPRARQATMRAYTF 184
           R ++R T SPS+SL        S +  PR RQ  ++AY F
Sbjct: 16  RTSMRSTLSPSSSLKG-----KSPSRLPRVRQGELKAYRF 50


>SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)
          Length = 245

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 158 RILEKITSAFDVCRKYCLYTHWRRRRLPTMTRLDENVRTKTTDCN 24
           R L+ + SA  VC +YCLY  W R R  ++  +   + T  TD N
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRARNKSLQDI-TTMFTPHTDWN 141


>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 158 RILEKITSAFDVCRKYCLYTHWRRRR 81
           R L+ + SA  VC +YCLY  W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123


>SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)
          Length = 184

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 158 RILEKITSAFDVCRKYCLYTHWRRRR 81
           R L+ + SA  VC +YCLY  W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123


>SB_25895| Best HMM Match : Transposase_5 (HMM E-Value=0.05)
          Length = 590

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -3

Query: 128 DVCRKYCLYTHWR-----RRRLPTMTRLDENVRTKTTDCNLF 18
           D+    CL T  R     RRRLP   RL +    +T D NLF
Sbjct: 76  DIINDNCLLTLSRANQELRRRLPLKPRLHDRTVARTLDGNLF 117


>SB_25847| Best HMM Match : Methuselah_N (HMM E-Value=0.48)
          Length = 390

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 225 CWPRKTHAIRRRPRMQTDFKSAALQRV-LRPIQGQPRCSERTEGISL 362
           C  R+T   RRRPR +   K A ++      + G P  SE     SL
Sbjct: 343 CSKRRTRGFRRRPRKRRSSKKARIRSTNSDSVTGTPGISEPKREASL 389


>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
          Length = 634

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 234 RKTHAIRRRPRMQTDFKSAALQRVLRPIQGQPRCSERTEGISLTVFETF 380
           +K   IR R      FK +    V RPI G+P  + + +   L V ++F
Sbjct: 395 KKCSGIRGRLTPNPSFKCSRCLGVARPIDGRPLDTVQVDDQQLAVVDSF 443


>SB_9381| Best HMM Match : TAF4 (HMM E-Value=2.9)
          Length = 210

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 225 CWPRKTHAIRRRPRMQTDFKSAALQRV-LRPIQGQPRCSERTEGISL 362
           C  R+T   RRRPR +   K A ++      + G P  SE     SL
Sbjct: 163 CSKRRTRGFRRRPRKRRSSKKARIRSTNSDSVTGTPGISEPKREASL 209


>SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -3

Query: 275 RLHPWS--TSDSMSLPRPAHPEPDRQR 201
           R HP S  T  +  LPR  HP P ++R
Sbjct: 64  RAHPQSPPTEPTQRLPRDGHPAPSKRR 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,933,308
Number of Sequences: 59808
Number of extensions: 264701
Number of successful extensions: 693
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)