Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30920X
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.2  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   7.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   9.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   9.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 403 RPTGDNGRNVSNTVRLMPSVRSLQR 329
           RP+G+N  +    VR+   VRS+ +
Sbjct: 48  RPSGENATDGPAVVRVNIFVRSISK 72


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 150 RKNNKCV*RMSKVLPLHTLAQKAT 79
           R +N    R+SKV+  HT+  K T
Sbjct: 5   RLSNVATFRLSKVMLDHTINSKKT 28


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 365 SEANAFSSFATTWLSLN 315
           S +  FSS + TWL +N
Sbjct: 425 SVSAGFSSSSNTWLRVN 441


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 365 SEANAFSSFATTWLSLN 315
           S +  FSS + TWL +N
Sbjct: 425 SVSAGFSSSSNTWLRVN 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,597
Number of Sequences: 438
Number of extensions: 2556
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)