Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30920X
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13300.1 68414.m01544 myb family transcription factor contain...    29   1.6  
At5g60270.1 68418.m07554 lectin protein kinase family protein co...    28   2.1  
At2g37880.1 68415.m04650 expressed protein contains Pfam profile...    27   3.7  
At1g26930.1 68414.m03283 kelch repeat-containing F-box family pr...    27   4.9  
At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains ...    27   4.9  
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ...    27   6.5  

>At1g13300.1 68414.m01544 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 344

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
 Frame = +3

Query: 234 RKTHAIRRRPRMQTDFKSAALQRVLRPIQ--------GQPRCSERTEGISLTVFETFLPL 389
           RK H  +R   +  D  + A++   R +         GQP CSE+T G    V E FL +
Sbjct: 29  RKIHVFQRELPLCLDLVTQAIEACKRELPEMTTENMYGQPECSEQTTGECGPVLEQFLTI 88


>At5g60270.1 68418.m07554 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain, and PF00138: Legume
           lectins alpha domain
          Length = 668

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 213 WLWVCWPRKTHAIRRRPRMQTDFKSAALQRVLR 311
           W+  CW R +    R PR+ T+F S  +++VL+
Sbjct: 557 WVSECWKRSSLIDARDPRL-TEFSSQEVEKVLK 588


>At2g37880.1 68415.m04650 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 247

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 189 CMLSSLPVWLWVCWPRKT-HAIRRRPRMQT 275
           C+L S+PVW   C  RK   A+RR    +T
Sbjct: 143 CLLRSVPVWTMFCNGRKLGFAVRRSANEET 172


>At1g26930.1 68414.m03283 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 421

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 380 ERFKYSEANAFSSFATTWLSLNWP*YALQCGRLKVRLHPWSTSDSMSLPR 231
           E F+Y++  + +   T  L   W   +    R  +  + WST+ SM++PR
Sbjct: 154 ECFRYADKESLA-VGTDLLVFGWEVSSYVIYRYSLLTNSWSTAKSMNMPR 202


>At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains
           Pfam PF04153: NOT2 / NOT3 / NOT5 family; similar to Rga
           (GI:1658504) [Drosophila melanogaster]
          Length = 444

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 211 SGSGCAGRGRLMLSDVDQGCRRTLS-LPHCSAYYGQFKDNHVVA-NELKALASL 366
           SGSG  G+ R+M   + QG  + LS L +     G    NHV A N L ++  L
Sbjct: 69  SGSGNIGQNRMMGGVLPQGSPQVLSMLGNSYPSAGGLSQNHVQAMNSLSSMGLL 122


>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 387

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 281 KVRLHPWSTSDSMSLPRPAHPEPDRQR*EHTPSYLMRFI 165
           K  LH W T D+ S  +    EPD    E  P+  + F+
Sbjct: 42  KCHLHKWVTEDTFSRLKEKEKEPDVPEPEPEPTTEILFL 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,829,607
Number of Sequences: 28952
Number of extensions: 180564
Number of successful extensions: 444
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)