Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30917
         (724 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB72ED Cluster: PREDICTED: similar to CG33950-PD...    45   0.002
UniRef50_Q06561 Cluster: Basement membrane proteoglycan precurso...    40   0.082
UniRef50_P98160 Cluster: Basement membrane-specific heparan sulf...    34   4.1  
UniRef50_Q11WT3 Cluster: DTDP-glucose 4,6 dehydratase; n=1; Cyto...    33   9.4  
UniRef50_Q37382 Cluster: NADH-ubiquinone oxidoreductase chain 3;...    33   9.4  

>UniRef50_UPI0000DB72ED Cluster: PREDICTED: similar to CG33950-PD,
            isoform D; n=1; Apis mellifera|Rep: PREDICTED: similar to
            CG33950-PD, isoform D - Apis mellifera
          Length = 3382

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +3

Query: 6    MNADSNIYIGGIPSWLNIHG--YPGFIGCIENVETTDSHRGLNLRDTAVAGRNTQLC 170
            +N   N+Y+GG+P +   +G    GF GCI  +E  DS   +++ D A+ G+N   C
Sbjct: 3254 LNTKGNVYLGGVPDYAMTYGKYQEGFSGCIYTMEVQDS-GAIDIGDKAIRGKNVSPC 3309


>UniRef50_Q06561 Cluster: Basement membrane proteoglycan precursor;
            n=8; Eukaryota|Rep: Basement membrane proteoglycan
            precursor - Caenorhabditis elegans
          Length = 3375

 Score = 39.5 bits (88), Expect = 0.082
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 3    VMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRGLNLRDTAVAGRNTQLC 170
            ++N D NI++GG+P      G      F+GCI +VE       L+L  TA+ G+N + C
Sbjct: 3303 MLNVDGNIFVGGVPDISKATGGLFSNNFVGCIADVELNGVK--LDLMATAIDGKNVKPC 3359


>UniRef50_P98160 Cluster: Basement membrane-specific heparan sulfate
            proteoglycan core protein precursor; n=26; Eumetazoa|Rep:
            Basement membrane-specific heparan sulfate proteoglycan
            core protein precursor - Homo sapiens (Human)
          Length = 4391

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
 Frame = +3

Query: 6    MNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG------LNLRDTAVAGRN 158
            +NA  ++YIGG P    + G     G  GC++N+    +  G      L+L+  A AG N
Sbjct: 4326 VNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGAPPPQPLDLQHRAQAGAN 4385

Query: 159  TQLC 170
            T+ C
Sbjct: 4386 TRPC 4389


>UniRef50_Q11WT3 Cluster: DTDP-glucose 4,6 dehydratase; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: DTDP-glucose 4,6
           dehydratase - Cytophaga hutchinsonii (strain ATCC 33406
           / NCIMB 9469)
          Length = 301

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 232 RDFLLNYFVVFVSMNSNQESLHSCVFRPATAVSRKFNPRWLSVVSTFSMQPMKPGYPW 59
           RDF LN   VF  ++S ++++ SC F   ++ +   NP  L +     + P+ P Y W
Sbjct: 83  RDFHLNVLNVFNMLDSIRKNIPSCKFVNLSSAAVYGNPESLPIKEDTPINPLSP-YGW 139


>UniRef50_Q37382 Cluster: NADH-ubiquinone oxidoreductase chain 3;
           n=4; Eukaryota|Rep: NADH-ubiquinone oxidoreductase chain
           3 - Acanthamoeba castellanii (Amoeba)
          Length = 118

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 220 LNYFVVFVSMNSNQESLHSCVFRPATAVSRKFNPRWLSVVSTFSMQPMKPGY--PW 59
           L+YF+V+   +  + S + C F+P      KFN R+  +   F +  ++  Y  PW
Sbjct: 25  LSYFLVYQESDIEKNSAYECGFQPFEDTRSKFNVRYYLIAILFMIFDLEIMYLFPW 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,521,013
Number of Sequences: 1657284
Number of extensions: 11033158
Number of successful extensions: 22860
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22853
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)