Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30917
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    27   3.6  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   4.7  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   6.3  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    25   8.3  

>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 249 GMIVYFKYYNLMIKQSEDLLS 311
           GM+   KYYN + KQ + +LS
Sbjct: 362 GMLATVKYYNFLKKQDDSILS 382


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 155 STSHSGVSQIQSSVA---VRCLNVLNATDEAWISVDVQPAWYSTDV 27
           +T  SG+ +    +A   + C  +++  +EAWI   V+ A+  TDV
Sbjct: 446 NTGKSGIFEANMYLAEDRILCFELVSKKNEAWILHYVKSAYADTDV 491


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 208 VVFVSMNSNQESLHSCVFRPATAVSRKFNPRWLSVVSTFS 89
           V+F ++NS  ES    VFR  T++ R  + +  +V   F+
Sbjct: 143 VIFNAVNSPDESFRESVFRTITSLPRLLSGQDSAVTPLFT 182


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 36  GIPSWLNIHGYPGFIGCIENVETTDS 113
           G+  W+++HG PG     EN   T S
Sbjct: 148 GLKVWIDLHGVPGSQNGFENSGKTGS 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,851
Number of Sequences: 5004
Number of extensions: 48271
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)