Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30917
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 32   0.41 
SB_59235| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)           31   1.2  
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)          28   8.8  

>SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1049

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 21   NIYIGGIPSWLNIHGY-PGFIGCIENV 98
            ++YIGG P  +   G  PGFIGCI N+
Sbjct: 996  SLYIGGEPGGMREDGSNPGFIGCIRNI 1022


>SB_59235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 18 SNIYIGGIPSWLNIHGYPGFIGCIENV 98
          S +YIGG  S     G P F GCI+NV
Sbjct: 10 SKVYIGGTTSLEKELGIPNFQGCIKNV 36


>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
          Length = 1071

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 18  SNIYIGGIPSWLNIHGYPGFIGCIENV 98
           S +YIGG  S     G P F GCI+NV
Sbjct: 151 SKVYIGGTTSLEKELGIPNFQGCIKNV 177



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 18  SNIYIGGIPSWLNIHGYPGFIGCIENV 98
           S +YIGG  S     G P F GCI+NV
Sbjct: 839 SKVYIGGTTSLEKELGIPNFQGCIKNV 865


>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 656 FLWHQIRSSSEHPATRRSHYEGP 588
           F    +R+SS+HP+  RS  EGP
Sbjct: 459 FKTESVRTSSDHPSLLRSSVEGP 481


>SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)
          Length = 1001

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 3   VMNADSNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRGL 125
           VM AD  +YIGG+      HGY         +E  +S+ G+
Sbjct: 17  VMAADKPLYIGGLFDLSTKHGYGALPAAEMAIEEINSNAGI 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,718,260
Number of Sequences: 59808
Number of extensions: 336631
Number of successful extensions: 617
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)