Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30917
(724 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB209851-1|BAD93088.1| 2331|Homo sapiens Basement membrane-speci... 36 0.15
X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane h... 34 0.45
M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteogly... 34 0.59
AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteog... 34 0.59
AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteog... 34 0.59
AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteog... 34 0.59
D87469-1|BAA13407.2| 2854|Homo sapiens KIAA0279 protein protein. 31 5.5
AL390252-1|CAI13170.1| 2923|Homo sapiens cadherin, EGF LAG seven... 31 5.5
AF234887-1|AAG00080.1| 2923|Homo sapiens FLAMINGO 1 protein. 31 5.5
AB065955-1|BAC06168.1| 2923|Homo sapiens seven transmembrane hel... 31 5.5
Z99289-2|CAI42325.1| 1823|Homo sapiens laminin, alpha 4 protein. 30 9.6
X91171-1|CAA62596.1| 1816|Homo sapiens laminin alpha 4 protein. 30 9.6
X76939-1|CAA54258.1| 1581|Homo sapiens laminin A3 protein. 30 9.6
S78569-1|AAB34635.1| 1816|Homo sapiens laminin alpha 4 chain pro... 30 9.6
BC066552-1|AAH66552.1| 1816|Homo sapiens LAMA4 protein protein. 30 9.6
AL590106-3|CAI12950.1| 1823|Homo sapiens laminin, alpha 4 protein. 30 9.6
AB210027-1|BAE06109.1| 1852|Homo sapiens LAMA4 variant protein p... 30 9.6
>AB209851-1|BAD93088.1| 2331|Homo sapiens Basement membrane-specific
heparan sulfate proteoglycan core protein precursor
protein.
Length = 2331
Score = 35.9 bits (79), Expect = 0.15
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +3
Query: 6 MNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG------LNLRDTAVAGRN 158
+NA N+YIGG P + G G GC++N+ + G L+L+ A AG N
Sbjct: 2266 VNAKGNVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGAPPPQPLDLQHRAQAGAN 2325
Query: 159 TQLC 170
T+ C
Sbjct: 2326 TRPC 2329
>X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane
heparan sulfate proteoglycan core protein protein.
Length = 4393
Score = 34.3 bits (75), Expect = 0.45
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +3
Query: 6 MNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG------LNLRDTAVAGRN 158
+NA +IYIGG P + G G GC++N+ + G L+L+ A AG N
Sbjct: 4328 VNAKGSIYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGAPPPQPLDLQHRAQAGAN 4387
Query: 159 TQLC 170
T+ C
Sbjct: 4388 TRPC 4391
>M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteoglycan
protein.
Length = 4391
Score = 33.9 bits (74), Expect = 0.59
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +3
Query: 6 MNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG------LNLRDTAVAGRN 158
+NA ++YIGG P + G G GC++N+ + G L+L+ A AG N
Sbjct: 4326 VNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGAPPPQPLDLQHRAQAGAN 4385
Query: 159 TQLC 170
T+ C
Sbjct: 4386 TRPC 4389
>AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteoglycan
2 protein.
Length = 4391
Score = 33.9 bits (74), Expect = 0.59
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +3
Query: 6 MNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG------LNLRDTAVAGRN 158
+NA ++YIGG P + G G GC++N+ + G L+L+ A AG N
Sbjct: 4326 VNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGAPPPQPLDLQHRAQAGAN 4385
Query: 159 TQLC 170
T+ C
Sbjct: 4386 TRPC 4389
>AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteoglycan
2 protein.
Length = 4391
Score = 33.9 bits (74), Expect = 0.59
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +3
Query: 6 MNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG------LNLRDTAVAGRN 158
+NA ++YIGG P + G G GC++N+ + G L+L+ A AG N
Sbjct: 4326 VNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGAPPPQPLDLQHRAQAGAN 4385
Query: 159 TQLC 170
T+ C
Sbjct: 4386 TRPC 4389
>AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteoglycan
perlecan protein.
Length = 4370
Score = 33.9 bits (74), Expect = 0.59
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +3
Query: 6 MNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG------LNLRDTAVAGRN 158
+NA ++YIGG P + G G GC++N+ + G L+L+ A AG N
Sbjct: 4305 VNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGAPPPQPLDLQHRAQAGAN 4364
Query: 159 TQLC 170
T+ C
Sbjct: 4365 TRPC 4368
>D87469-1|BAA13407.2| 2854|Homo sapiens KIAA0279 protein protein.
Length = 2854
Score = 30.7 bits (66), Expect = 5.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 18 SNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRGLNLRD 137
SNI +GGIP GF GC++ V +D+ G+N D
Sbjct: 1671 SNITVGGIPGPAGGVAR-GFRGCLQGVRVSDTPEGVNSLD 1709
>AL390252-1|CAI13170.1| 2923|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 2 (flamingo homolog, Drosophila) protein.
Length = 2923
Score = 30.7 bits (66), Expect = 5.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 18 SNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRGLNLRD 137
SNI +GGIP GF GC++ V +D+ G+N D
Sbjct: 1740 SNITVGGIPGPAGGVAR-GFRGCLQGVRVSDTPEGVNSLD 1778
>AF234887-1|AAG00080.1| 2923|Homo sapiens FLAMINGO 1 protein.
Length = 2923
Score = 30.7 bits (66), Expect = 5.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 18 SNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRGLNLRD 137
SNI +GGIP GF GC++ V +D+ G+N D
Sbjct: 1740 SNITVGGIPGPAGGVAR-GFRGCLQGVRVSDTPEGVNSLD 1778
>AB065955-1|BAC06168.1| 2923|Homo sapiens seven transmembrane helix
receptor protein.
Length = 2923
Score = 30.7 bits (66), Expect = 5.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 18 SNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRGLNLRD 137
SNI +GGIP GF GC++ V +D+ G+N D
Sbjct: 1740 SNITVGGIPGPAGGVAR-GFRGCLQGVRVSDTPEGVNSLD 1778
>Z99289-2|CAI42325.1| 1823|Homo sapiens laminin, alpha 4 protein.
Length = 1823
Score = 29.9 bits (64), Expect = 9.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 15 DSNIYIGGIPSWLNIH---GYPGFIGCIE 92
D+ Y+GG+PS + PGF+GC+E
Sbjct: 979 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 1007
>X91171-1|CAA62596.1| 1816|Homo sapiens laminin alpha 4 protein.
Length = 1816
Score = 29.9 bits (64), Expect = 9.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 15 DSNIYIGGIPSWLNIH---GYPGFIGCIE 92
D+ Y+GG+PS + PGF+GC+E
Sbjct: 972 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 1000
>X76939-1|CAA54258.1| 1581|Homo sapiens laminin A3 protein.
Length = 1581
Score = 29.9 bits (64), Expect = 9.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 15 DSNIYIGGIPSWLNIH---GYPGFIGCIE 92
D+ Y+GG+PS + PGF+GC+E
Sbjct: 737 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 765
>S78569-1|AAB34635.1| 1816|Homo sapiens laminin alpha 4 chain protein.
Length = 1816
Score = 29.9 bits (64), Expect = 9.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 15 DSNIYIGGIPSWLNIH---GYPGFIGCIE 92
D+ Y+GG+PS + PGF+GC+E
Sbjct: 972 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 1000
>BC066552-1|AAH66552.1| 1816|Homo sapiens LAMA4 protein protein.
Length = 1816
Score = 29.9 bits (64), Expect = 9.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 15 DSNIYIGGIPSWLNIH---GYPGFIGCIE 92
D+ Y+GG+PS + PGF+GC+E
Sbjct: 972 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 1000
>AL590106-3|CAI12950.1| 1823|Homo sapiens laminin, alpha 4 protein.
Length = 1823
Score = 29.9 bits (64), Expect = 9.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 15 DSNIYIGGIPSWLNIH---GYPGFIGCIE 92
D+ Y+GG+PS + PGF+GC+E
Sbjct: 979 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 1007
>AB210027-1|BAE06109.1| 1852|Homo sapiens LAMA4 variant protein
protein.
Length = 1852
Score = 29.9 bits (64), Expect = 9.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 15 DSNIYIGGIPSWLNIH---GYPGFIGCIE 92
D+ Y+GG+PS + PGF+GC+E
Sbjct: 1008 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 1036
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,702,733
Number of Sequences: 237096
Number of extensions: 1521406
Number of successful extensions: 2871
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2871
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -