Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30917
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    40   0.002
AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlec...    40   0.002
Z79600-7|CAI79194.1|  173|Caenorhabditis elegans Hypothetical pr...    29   2.5  

>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 3    VMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRGLNLRDTAVAGRNTQLC 170
            ++N D NI++GG+P      G      F+GCI +VE       L+L  TA+ G+N + C
Sbjct: 3303 MLNVDGNIFVGGVPDISKATGGLFSNNFVGCIADVELNGVK--LDLMATAIDGKNVKPC 3359


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 3    VMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRGLNLRDTAVAGRNTQLC 170
            ++N D NI++GG+P      G      F+GCI +VE       L+L  TA+ G+N + C
Sbjct: 3303 MLNVDGNIFVGGVPDISKATGGLFSNNFVGCIADVELNGVK--LDLMATAIDGKNVKPC 3359


>AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlecan
            protein.
          Length = 925

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 3    VMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRGLNLRDTAVAGRNTQLC 170
            ++N D NI++GG+P      G      F+GCI +VE       L+L  TA+ G+N + C
Sbjct: 853  MLNVDGNIFVGGVPDISKATGGLFSNNFVGCIADVELNGVK--LDLMATAIDGKNVKPC 909


>Z79600-7|CAI79194.1|  173|Caenorhabditis elegans Hypothetical
           protein F59C6.12 protein.
          Length = 173

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 510 SINLNTKYNGNI*CQLFLYILNHNEYLFLNDNR 412
           S+    +YNG I  + + Y ++HN +LFL+D+R
Sbjct: 8   SLYTQGQYNGKI--REYFYYVSHNGFLFLDDSR 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,189,516
Number of Sequences: 27780
Number of extensions: 264777
Number of successful extensions: 558
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)