Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30913X
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 0.78
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.4
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 3.2
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 26 3.2
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 26 3.2
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 9.6
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 25 9.6
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 9.6
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 25 9.6
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 25 9.6
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 9.6
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 28.3 bits (60), Expect = 0.78
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 134 VVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMGTPINFGSRAPRTSS 298
V A+ + AV KH+ V VVN+ + K N +G P +F T S
Sbjct: 27 VTAEDEKAVTNKKHINSSATVHVFHGVVNRTFK-TKGNTVGLPKSFSKAVIETLS 80
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 116 QLYNSVVVADYDSAVEKSKHLYEEKKS 196
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 502 VDLVALPQSD*LPANYRAYLDLAVAVGRSAIVALNIIAQHQSETVEL 362
+DL + SD L NY ++DL V + S + +II Q V L
Sbjct: 374 IDLEQISPSDCLLDNYSLFVDLLVTLKVSLLRIKSIIVQFSERIVFL 420
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 155 AVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMGTPIN 268
A+E+ + Y ++ E +TN++N++ N N G +N
Sbjct: 845 ALEQIRVHYLIRRCEALTNIINRISFRNNPNMDGEVLN 882
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -3
Query: 382 QSETVELENKINRVIGEDKSEINWEKIAGRCPWSPGAKVDRRTHAVHLVVSYQFVHDI 209
+SE +E + G D+ E N + + PW PG K++ V Y+ +H+I
Sbjct: 44 ESEEEYIEADGEKDNGMDEEEQN-DAQPSKIPWLPGGKINADEKLVADPSVYEMLHNI 100
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 440 VKISPIVSWKLIALWESNKVYFKA*ALNVTNTWYW 544
+ I+ + + K +A +S Y K NVT W W
Sbjct: 120 IPINIVATNKTLANSDSQNAYAKLSIQNVTGNWTW 154
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 215 VNKLIRNNKMNCMGTPINFGSRAPRTSSGYFFP 313
+ K+I NN++N TP PR+SS F P
Sbjct: 230 LQKVISNNRLNSSSTP-----PTPRSSSSIFNP 257
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 24.6 bits (51), Expect = 9.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 276 PGLQGHRPAIFSQLISDLSSPITRFILFSS 365
PGL+ IF QLISD SS R + S+
Sbjct: 537 PGLKDCIDHIFQQLISDTSSVTVRRLATST 566
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 151 VVIGDDDAIVKLLLQNVVRDVGICSIQ 71
VVIGD+ I K +L N V+ CSI+
Sbjct: 371 VVIGDNCRIGKAILANSVKIGNNCSIE 397
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 9.6
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 107 LEEQLYNSVVVADYDSAVEKSKHLYEE-KKSEVITNVVNKLIRNNKMN 247
LE L + +VA S++EKSK LY+ K ++ +VV R ++MN
Sbjct: 279 LEYMLEHGGLVALEASSIEKSKLLYDTLDKHDLYISVVEPAAR-SRMN 325
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 440 VKISPIVSWKLIALWESNK 496
VK SP V+WK +W S K
Sbjct: 27 VKASPKVNWKTHIIWRSLK 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,978
Number of Sequences: 5004
Number of extensions: 36576
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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