Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30913X
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0378 - 2946916-2947590                                           28   4.2  
12_02_0218 - 15817184-15817480,15817564-15817734,15818241-15818477     28   5.6  
01_05_0487 + 22641133-22642182,22642276-22642863,22642961-226430...    28   5.6  
12_02_1080 - 25911521-25911922                                         27   7.4  
03_06_0460 - 34098115-34098622,34098981-34099355,34100939-341011...    27   7.4  
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617     27   9.8  
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    27   9.8  
02_05_0364 + 28304743-28304814,28305021-28305197,28307309-283074...    27   9.8  

>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 11  GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 151
           G+    ++P +++L    ASL AA++ VP    + ++  +VV  D+D
Sbjct: 87  GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


>12_02_0218 - 15817184-15817480,15817564-15817734,15818241-15818477
          Length = 234

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
 Frame = +2

Query: 134 VVADYDSAVEKSKHLYEEKKS-EVITNVVNKLIRNNKMNCMGTPINFGSRAPRTSSGYFF 310
           V   Y  A    KHL    ++ + I     + I   K +C   P ++     RT    + 
Sbjct: 129 VSTGYQQADTPCKHLIPVGRAGKKILVATRRFIPGRKFHCQDIPEDYAKVEVRTVIEAYR 188

Query: 311 PVDFRLIFADYAIYLIFKLDGLALMLSNDVQ 403
             +   +  +  +YL   +D L L   ND++
Sbjct: 189 MHELNFLTTEQIVYLEDAIDKLILWHKNDIE 219


>01_05_0487 +
           22641133-22642182,22642276-22642863,22642961-22643068,
           22643582-22643692,22643784-22643849,22644858-22644917,
           22644990-22645119,22645159-22645547,22645783-22645902,
           22645957-22646022,22646190-22646255
          Length = 917

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = -3

Query: 445 LDLAVAVGRSAIVALNIIAQHQSETVELENKINRVIG 335
           +D+   +    I +LNI+ +H+++ + + NK++R+ G
Sbjct: 516 VDIMRGIQAQTIESLNILKRHKADFIIVLNKVDRLFG 552


>12_02_1080 - 25911521-25911922
          Length = 133

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 361 ENKINRVIGEDKSEINWEKIAGRCPWSPGAKVDR 260
           E +  R+ GE+   + WE+   R  W  G +VD+
Sbjct: 61  EERRRRLDGEEVQPLGWEERGWRGEWGLGRQVDK 94


>03_06_0460 -
           34098115-34098622,34098981-34099355,34100939-34101156,
           34101235-34101297
          Length = 387

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 99  LGTSESAAYRDATKRHRITIAGFIFGAS 16
           +G +++A+Y  +T R  + +AG + GAS
Sbjct: 284 VGAADAASYCGSTSRRMVQVAGEVLGAS 311


>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
          Length = 988

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 101 DILEEQLYNSVVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNK 241
           DIL E LY S  ++DY  D      ++L +  +   + N++ + ++NN+
Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNR 285


>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
            2353031-2353708,2353800-2353964,2354139-2354433,
            2354581-2354795,2354885-2355190,2355269-2355332,
            2355426-2355665,2355783-2355886
          Length = 1505

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 60   SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 155
            +W + +L +P ++   W   + IASS  +T +
Sbjct: 1080 TWQVLILIVPMAVACMWMQRYYIASSRELTRI 1111


>02_05_0364 +
           28304743-28304814,28305021-28305197,28307309-28307431,
           28307644-28308043,28308129-28308242,28308359-28308454,
           28308598-28308791
          Length = 391

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 451 AYLDLAVAVGRSAIVALNIIAQHQSETVELENKINRVIGEDK 326
           A +  A++V R A     ++   QSE+    N I   IG+D+
Sbjct: 158 AQMHAALSVARLATAVARMVGNCQSESTNANNTIMTAIGKDE 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,309,603
Number of Sequences: 37544
Number of extensions: 242069
Number of successful extensions: 702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)