Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30913X
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44917| Best HMM Match : DUF156 (HMM E-Value=3)                      29   2.5  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_23066| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_49274| Best HMM Match : p450 (HMM E-Value=0)                        27   7.6  
SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_44917| Best HMM Match : DUF156 (HMM E-Value=3)
          Length = 1198

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 264  STLAPGLQGHRPAIFSQLISDLSSPITRFIL 356
            S L P L+ H+PA+F+   +D+   + RF++
Sbjct: 1044 SRLNPDLRKHQPAVFTHKPTDVIEHVVRFVI 1074


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 81  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 212
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


>SB_23066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 898

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 358 NKINRVIGEDKSEINWEKIAGRCPW 284
           +K+   +G  K  +NW++  GRC W
Sbjct: 761 DKMPVCVGTPKCPVNWQEYNGRCYW 785


>SB_49274| Best HMM Match : p450 (HMM E-Value=0)
          Length = 568

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 427 VGRSAIVALNIIAQHQSETVELENKINRVIGEDKSEINWEK 305
           V  S + A+  IA H     EL ++I RV+G D+  I  +K
Sbjct: 376 VSSSLLWAVAYIASHDELQDELRDEIMRVVGNDRVPILQDK 416


>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 170 KHLYEEKKSEVITNVVNKLIRNNKMNCMGTPIN-FGSRAPRTSSGYFFPVDFRLIF 334
           K L E+K++E   +V+NK I N  M  +G  I  + ++A  T +    PV+F L+F
Sbjct: 175 KKLPEDKRNEY-QSVLNK-IDNYNMQELGELIKKYDAKATTTGNDLSDPVEFNLMF 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,129,468
Number of Sequences: 59808
Number of extensions: 276717
Number of successful extensions: 900
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)