Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30913X
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   0.95 
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   0.95 
U28944-13|AAA68372.1|  365|Caenorhabditis elegans Hypothetical p...    29   2.9  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 143 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 253
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 143 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 253
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>U28944-13|AAA68372.1|  365|Caenorhabditis elegans Hypothetical
           protein C18A3.1 protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +2

Query: 71  LYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNC 250
           ++   S + N++   +   + +     SA   S+ + E +KSE ++N+++  + NN + C
Sbjct: 83  IFKKKSILDNNLKSRKAAETALNVSIPSASASSEQIIEFQKSESLSNLMSNGMINNWVRC 142

Query: 251 MG 256
            G
Sbjct: 143 SG 144


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 288 LGALEPKLIGVPMQFILLFRISLFTTFVMTSLFFSSYK 175
           LGAL    +G     I LF +S FTT  +  L FS YK
Sbjct: 194 LGALIEGELGT---LISLFNVSPFTTVTVDQLLFSGYK 228


>Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical
           protein F36F2.3b protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 117 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 215
           SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 317


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
            F36F2.3a protein.
          Length = 1128

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 117  SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 215
            SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 1082


>U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical
           protein F41C6.7 protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 239 KMNCMGTPINFGSRAPRTSSGYFFPVDFRLIFADYAIYLIFKLDGLALMLSNDV 400
           K+  +  P    SRAP T +     +  +  FA+YAI +I  L  +AL+L   V
Sbjct: 64  KVPTVNLPPQSSSRAPSTLN--ILKMTNKKEFAEYAIMIIVNLANVALVLIKSV 115


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 50  LCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSE 199
           LC F +       DV     EE+L +   VAD+   V++ K   +E+  E
Sbjct: 382 LCFFFSEARRLGIDVGGLEQEEKLLSGKAVADFKQRVKEEKDAEKERAKE 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,201,424
Number of Sequences: 27780
Number of extensions: 204585
Number of successful extensions: 688
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)