Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30913X
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.094
At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein ...    28   4.7  
At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein ...    28   4.7  
At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein ...    28   4.7  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    27   6.2  
At1g59077.1 68414.m06670 hypothetical protein                          27   6.2  
At1g58766.1 68414.m06659 hypothetical protein                          27   6.2  
At1g58310.1 68414.m06633 F-box family protein contains F-box dom...    27   6.2  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   6.2  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   8.2  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 14  LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 193
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 194 SEVITNV 214
             +  N+
Sbjct: 214 GSIAPNL 220


>At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein
           similar to SP|P36957 Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex, mitochondrial precursor (EC
           2.3.1.61) {Homo sapiens}; contains Pfam profiles
           PF00198: 2-oxo acid dehydrogenases acyltransferase
           (catalytic domain), PF00364: Biotin-requiring enzyme
          Length = 365

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -3

Query: 457 YRAYLDLAVAVGRSAIVALNII-AQHQSETVELENKINRVIGE-DKSEINWEKIAG 296
           YR Y+D+++AVG S  + + +I    +    E+E  IN +  + ++  I+ +++AG
Sbjct: 223 YRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINSLAKKANEGTISIDEMAG 278


>At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein
           similar to SP|P36957 Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex, mitochondrial precursor (EC
           2.3.1.61) {Homo sapiens}; contains Pfam profiles
           PF00198: 2-oxo acid dehydrogenases acyltransferase
           (catalytic domain), PF00364: Biotin-requiring enzyme
          Length = 463

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -3

Query: 457 YRAYLDLAVAVGRSAIVALNII-AQHQSETVELENKINRVIGE-DKSEINWEKIAG 296
           YR Y+D+++AVG S  + + +I    +    E+E  IN +  + ++  I+ +++AG
Sbjct: 321 YRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINSLAKKANEGTISIDEMAG 376


>At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein
           similar to SP|P36957 Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex, mitochondrial precursor (EC
           2.3.1.61) {Homo sapiens}; contains Pfam profiles
           PF00198: 2-oxo acid dehydrogenases acyltransferase
           (catalytic domain), PF00364: Biotin-requiring enzyme
          Length = 464

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -3

Query: 457 YRAYLDLAVAVGRSAIVALNII-AQHQSETVELENKINRVIGE-DKSEINWEKIAG 296
           YR Y+D+++AVG S  + + +I    +    E+E  IN +  + ++  I+ +++AG
Sbjct: 322 YRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINSLAKKANEGTISIDEMAG 377


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 107  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 214
            LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 107 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 214
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 107 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 214
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g58310.1 68414.m06633 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 505

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 376 ETVELENKINRVIGEDKSEINWEKIAGRCPWSP 278
           E + L N +  +  E  SE+ WE ++G    SP
Sbjct: 337 EAIPLFNNLTHLTIESNSEVGWESVSGLLKNSP 369


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +3

Query: 60   SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 155
            +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 124 VKLLLQNVVRDVGICSIQRCH 62
           +K  ++N+++  G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,655,984
Number of Sequences: 28952
Number of extensions: 194434
Number of successful extensions: 682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)