Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30912
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   105   9e-24
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    29   0.72 
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   8.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  105 bits (251), Expect = 9e-24
 Identities = 49/85 (57%), Positives = 70/85 (82%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 IYAILAIGLLGFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQIN 435
           ++A+L+I LLG +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I 
Sbjct: 280 LWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQ 339

Query: 436 YN-PNIL*RLGFVFLFTVGGLTGVI 507
           ++   +L  +GF+ LFT+GGLTGVI
Sbjct: 340 WSRVPMLYAIGFLILFTIGGLTGVI 364



 Score = 95.5 bits (227), Expect = 7e-21
 Identities = 39/51 (76%), Positives = 46/51 (90%)
 Frame = +2

Query: 59  ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 211
           +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII
Sbjct: 215 MLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII 265



 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 27/61 (44%), Positives = 33/61 (54%)
 Frame = +3

Query: 507 LANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTI 686
           L+NS +DI  HDTY+VVAHFHYVLS               P   GL  N  +  IQF+ +
Sbjct: 365 LSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYNETLASIQFWIL 423

Query: 687 F 689
           F
Sbjct: 424 F 424



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 19/25 (76%), Positives = 20/25 (80%)
 Frame = +1

Query: 688 FIGVNITFFPQHFLGLAGIPRRYSD 762
           FIGVNI F PQHFLGL G+PRR  D
Sbjct: 424 FIGVNIVFGPQHFLGLNGMPRRIPD 448


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 247 FRKIYAILAIGLLGFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 390
           FR I A+  I L+GF+  + ++ T+G+ I T        I I VP  +
Sbjct: 532 FRFITAMFIIALIGFVFSSINLLTLGVPIATIIIRALDLITIVVPPAL 579


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 681 TIFYWSKYNIFSTTFFRFSWNTSTI 755
           T FYWS Y       F   W+TS +
Sbjct: 184 TAFYWSVYEAQQKRPFSLRWHTSLL 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,273
Number of Sequences: 5004
Number of extensions: 41955
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)