Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30912
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  118   5e-27
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   8e-10
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)                   28   9.5  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  118 bits (284), Expect = 5e-27
 Identities = 66/146 (45%), Positives = 81/146 (55%)
 Frame = +1

Query: 325 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 504
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 505 I*PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFH*ILIY*KFNFLQ 684
           I                                             +    +Y K +F  
Sbjct: 61  ILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWI 120

Query: 685 YFIGVNITFFPQHFLGLAGIPRRYSD 762
            FIGVNITFFPQHFLGLAG PRRYSD
Sbjct: 121 MFIGVNITFFPQHFLGLAGFPRRYSD 146



 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 30/73 (41%), Positives = 36/73 (49%)
 Frame = +3

Query: 507 LANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTI 686
           LANSS+D+ +HDTYYVVAHFHYVLS              +   TG   N    KI F+ +
Sbjct: 62  LANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIM 121

Query: 687 FYWSKYNIFSTTF 725
           F       F   F
Sbjct: 122 FIGVNITFFPQHF 134


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 27/35 (77%), Positives = 29/35 (82%)
 Frame = +1

Query: 658 IY*KFNFLQYFIGVNITFFPQHFLGLAGIPRRYSD 762
           +Y K +F   FIGVNITFFPQHFLGLAG PRRYSD
Sbjct: 26  LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSD 60


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 721 HFLGLAGIPRRYSD 762
           HFLGLAG PRRYSD
Sbjct: 1   HFLGLAGFPRRYSD 14


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 721 HFLGLAGIPRRYSD 762
           HFLGLAG PRRYSD
Sbjct: 1   HFLGLAGFPRRYSD 14


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 721 HFLGLAGIPRRYSD 762
           HFLGLAG PRRYSD
Sbjct: 1   HFLGLAGFPRRYSD 14


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 721 HFLGLAGIPRRYSD 762
           HFLGLAG PRRYSD
Sbjct: 1   HFLGLAGFPRRYSD 14


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 721 HFLGLAGIPRRYSD 762
           HFLGLAG PRRYSD
Sbjct: 1   HFLGLAGFPRRYSD 14


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 721 HFLGLAGIPRRYSD 762
           HFLGLAG PRRYSD
Sbjct: 1   HFLGLAGFPRRYSD 14


>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 304 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 453
           HH+ T+ I +         T+I   PT I +   +  +H T IN +P ++
Sbjct: 14  HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63


>SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)
          Length = 596

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 755 YRRGIPAKPKKCCGKNVIFTPIK 687
           Y R I A+ K+C GKNV+  P K
Sbjct: 120 YFRAIIARCKECLGKNVVLIPHK 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,127,836
Number of Sequences: 59808
Number of extensions: 273169
Number of successful extensions: 460
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)