Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30911
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    45   8e-06
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    45   8e-06
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   3.1  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   4.0  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    26   5.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.1  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    25   9.3  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   9.3  

>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 24/74 (32%), Positives = 38/74 (51%)
 Frame = +3

Query: 240 YGKIKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSF 419
           + KI  L FQ    +++ VDS    +GG++I VLG +         + QTF L    + +
Sbjct: 66  HNKILDLDFQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPNGY 125

Query: 420 YVQHDIFRLGIHDI 461
           +V +DIFR    D+
Sbjct: 126 FVLNDIFRFLREDV 139


>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 24/53 (45%), Positives = 33/53 (62%)
 Frame = +1

Query: 94  YDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKL 252
           Y+A+   F Q YY  FD  + R+ L ++Y  E S ++FEG QLQG   I+EKL
Sbjct: 4   YNALATQFTQFYYQTFD--SDRSQLSSLYR-EESMLSFEGAQLQGTKAIVEKL 53



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = +3

Query: 246 KIKSLTFQKITRIVTAVDSQPM-FDGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSF 419
           K+ SL FQ++   ++ +D+QP    G V++ V G L  DE+     Y Q F L     ++
Sbjct: 52  KLVSLPFQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNY 111

Query: 420 YVQHDIFRL 446
           YV +D+FRL
Sbjct: 112 YVLNDLFRL 120


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -1

Query: 454 WMPKRKMSC*T*NESPSGFNTNVCMYRCGGSSSHFNLPRTLIKTPPSNIGWESTAVTILV 275
           W  + K  C +   SP G N+++ +YR    +  F++P   I       GW     TI+ 
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAID------GWGQDLRTIMA 436

Query: 274 I 272
           I
Sbjct: 437 I 437


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 543 LDIW-YTLYFSCIYFVKEFMKLKGRDDYEIMIMI 641
           LDIW + + F+ + F K+    +GRD+Y+ ++ I
Sbjct: 217 LDIWSFGVMFAALIFKKDTF-FRGRDNYDQLVKI 249


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 296 HSSYYSSDFLKSQTFNFSIILTAPCSCTP 210
           HSSY++S  + +  FN  I+ T+  S +P
Sbjct: 587 HSSYHNSSHVPTAAFNSPIMRTSTKSTSP 615


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 400  FNTNVCMYRCGGSSSHFNLPRTLIKTPPSNIGWEST 293
            F+   C+Y    S   F+  R L+  PPS I  +ST
Sbjct: 1267 FSILTCIYNRITSGQGFSYSRLLVYLPPSQIEKKST 1302


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 473 KDRHNTKKCLT*I*YNI 523
           KD HNTKKCL  +  N+
Sbjct: 259 KDDHNTKKCLAQLLINL 275


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 101 ASYCGLSAI*IKMCLFVTPTKSPIPAEKFKM 9
           + Y  + AI I+ C F+T  ++PIP + F +
Sbjct: 21  SKYQSIYAIQIR-CFFLTVNRTPIPKQTFSL 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,228
Number of Sequences: 5004
Number of extensions: 56565
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)