Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30911
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1376 - 26528208-26528279,26529690-26529986 52 4e-07
01_06_0963 + 33441731-33442096,33442175-33442270 40 0.001
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 39 0.004
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129... 36 0.021
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 29 3.2
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421... 29 3.2
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836... 27 9.7
>08_02_1376 - 26528208-26528279,26529690-26529986
Length = 122
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 243 GKIKSLTFQKITRIVTAVDSQPMF-DGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDS 416
GK+ SL F + + VD QP GG+L+ V G L+ D P + Q F L P G +
Sbjct: 50 GKLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGN 109
Query: 417 FYVQHDIFRL 446
FYVQ+D+FRL
Sbjct: 110 FYVQNDMFRL 119
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 97 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKL 252
DA+ K FV+ YY FD R LV++Y + S +TFEG Q GA I KL
Sbjct: 4 DAVAKAFVEHYYRTFD--TNRPALVSLYQ-DGSMLTFEGQQFLGAAAIAGKL 52
>01_06_0963 + 33441731-33442096,33442175-33442270
Length = 153
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +1
Query: 91 QYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKL 252
Q D + + FV+ YY FD RA L +Y +TS ++FEG + GA +I KL
Sbjct: 24 QCDVVARAFVEYYYQTFD--TNRAALAALYG-QTSMLSFEGHMVAGAEEIGRKL 74
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 246 KIKSLTFQKITRIVTAVDSQPM--FDGGVLINVLGRLKCDEDPPHLYMQTF 392
K+ L F++ V VD QP F GG+L+ V G L+ + L F
Sbjct: 73 KLLGLPFEQCRHAVCTVDCQPTPSFPGGILVFVSGNLQLAGEEHQLRFSQF 123
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 285 VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 443
+ AVD+Q GGV + V G L +D + Q+F L P ++V +DI R
Sbjct: 86 IKAVDAQESLGGGVTVLVTGHLTGSDDVRREFSQSFFLAPQEKGYFVLNDILR 138
>02_03_0315 -
17610605-17610855,17611304-17611370,17612876-17612941,
17613037-17613158,17613245-17613428,17614262-17614494,
17614580-17614913,17615043-17615186,17615303-17615344
Length = 480
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 285 VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 443
+ VDSQ GGV + V G L + + Q+F L P ++V +D+FR
Sbjct: 78 IKTVDSQESLGGGVTVLVTGHLTVRDGVCREFSQSFFLAPQEKGYFVLNDMFR 130
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 294 VDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPL-GDSFYVQHDIFR 443
VD+Q +GGV I V G + + H + Q+F L P ++V +D+ R
Sbjct: 83 VDAQLSLNGGVHILVTGSIGHNGTMRHRFSQSFFLAPQESGGYFVLNDMLR 133
>03_04_0091 +
17241555-17241602,17241685-17241822,17241901-17242198,
17242281-17242513,17242632-17242827,17242911-17243032,
17243100-17243165,17243373-17243436,17243851-17244176
Length = 496
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 249 IKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFY-V 425
I S+ F + D+Q GVLI V G L E + Q+F L P Y V
Sbjct: 68 ILSMDFSNYLTEIETADAQLSHQDGVLIVVTGSL-TSEGICRRFTQSFFLAPQESGGYVV 126
Query: 426 QHDIFR 443
+DIFR
Sbjct: 127 LNDIFR 132
>01_01_1060 -
8363272-8365912,8366375-8366443,8366479-8366843,
8367403-8367550,8367630-8367873,8368105-8368407,
8368639-8368851,8368927-8369002,8369533-8369561,
8369610-8369984,8371784-8371927,8374053-8374086
Length = 1546
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 368 RIFVTLQSSKDIN*NASIKHWLGIHSSYYSSDFLKSQTFNFSIILT 231
R+F T+ + + N +HW+ +H S + L+ Q F FS+ T
Sbjct: 756 RVF-TMDTVYNFTVNPRDRHWIRLHFYPSSYNGLEPQDFRFSVFTT 800
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,827,902
Number of Sequences: 37544
Number of extensions: 337834
Number of successful extensions: 626
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -