Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30911
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  52   5e-07
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   6e-05
SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_40135| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 240 YGKIKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD-- 413
           Y KIK L F      +  VDS      GV++ V G L  +  P   +MQTFVL P  D  
Sbjct: 61  YEKIKDLNFVDCRTKILQVDSHSTLGSGVVVQVSGELSNNGQPMRKFMQTFVLAPGEDIR 120

Query: 414 SFYVQHDIFR 443
            +YV +DIFR
Sbjct: 121 KYYVHNDIFR 130


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 26/80 (32%), Positives = 43/80 (53%)
 Frame = +1

Query: 13  LNFSAGIGLFVGVTNRHILI*MALNPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVET 192
           L+ +A + + V  T         ++  ++ + K FV+ YY++FD  + R NL  +Y    
Sbjct: 90  LDVAASVEVCVNSTQFFNSFIETMSQPFEQVAKQFVEYYYSVFD--SNRNNLAPLYQ-PG 146

Query: 193 SFMTFEGVQLQGAVKIMEKL 252
           S +TFEG Q+QG   I+ KL
Sbjct: 147 SMLTFEGAQIQGTEAIVAKL 166



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 14/36 (38%), Positives = 29/36 (80%)
 Frame = +3

Query: 246 KIKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLK 353
           K+ S+ FQ++  ++T+ D+QP+ +GG+++ V+G+LK
Sbjct: 165 KLVSMPFQQVLHVITSQDAQPLPNGGIIVFVMGQLK 200


>SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 122 NNITHCSMIRLNGQILLICTMLKLHS*PLREYNCRVLL 235
           N + H +M+  +G   L CT+++ H       NCR LL
Sbjct: 315 NGVLHTAMLNHDGGFELQCTLVRTHPNSSNIVNCRFLL 352


>SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 364 SSSHFNLPRTLIKTPPSNIGWESTAVTILVIF*KVKLL 251
           + + FN  R     PPSN+ W   AV + ++F  VK L
Sbjct: 21  NDNFFNQNRKKFGAPPSNLVWALYAVFVGILFSVVKFL 58


>SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -2

Query: 180 VHINKICPLSRIIEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSRKIQDVTN 1
           + ++ + PL + +      LH    DC+    ++H D     C  N  PN +RK+ D  N
Sbjct: 139 IDVSGVMPLQQTMSPSEDCLH----DCVDESSDKHTD-----CQRNNVPNRTRKLSDTEN 189


>SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 193 KFQHCTY*QDLPVEPDHRTMCNIVAQNL 110
           KF  C Y +++ VE DH+ +  IV + L
Sbjct: 418 KFDQCVYGREVTVESDHKPLAAIVTKPL 445


>SB_40135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 579 RYKKNIMCTKCQEF*FNSCMLYQIQVK 499
           +Y K   C++CQ+   N   LYQ +VK
Sbjct: 55  KYSKTFACSRCQKLWKNRFSLYQQEVK 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,335,188
Number of Sequences: 59808
Number of extensions: 422622
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)