Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30911
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical pr...    75   4e-14
AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related ...    31   0.53 
AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related ...    31   0.53 
AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related ...    31   0.53 
Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U53139-10|AAK18937.1|  381|Caenorhabditis elegans Serpentine rec...    28   4.9  

>Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical
           protein R05D11.3 protein.
          Length = 133

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 32/72 (44%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
 Frame = +3

Query: 246 KIKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD-SFY 422
           K  +L F KI R +T +DSQP++DG + + VLG+LK DEDP + + Q F+L+P    S++
Sbjct: 61  KFTTLGFTKIQRAITVIDSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQGSYF 120

Query: 423 VQHDIFRLGIHD 458
           + ++IFRL +H+
Sbjct: 121 IGNEIFRLDLHN 132



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
 Frame = +1

Query: 76  MALNPQYDAIGKGFVQQYYTLFD--DPAQRA-NLVNMYNVETSFMTFEGVQLQGAVKIME 246
           M+ NP Y+++ K F+Q YY+ FD  D   RA  L ++Y+ E S+MTFEG Q +G   I++
Sbjct: 1   MSFNPDYESVAKAFIQHYYSKFDVGDGMSRAQGLSDLYDPENSYMTFEGQQAKGRDGILQ 60

Query: 247 KLKV*LFKK 273
           K     F K
Sbjct: 61  KFTTLGFTK 69


>AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related
           export protein NXT1 protein.
          Length = 137

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = +3

Query: 249 IKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQ 428
           I+SL  Q++   VT   S     GG+L+NV G +  D D    + QT +L      + V+
Sbjct: 75  IQSLDAQRLPEGVTGDMS-----GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVK 129

Query: 429 HDIFR 443
            D FR
Sbjct: 130 SDRFR 134


>AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform b protein.
          Length = 131

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = +3

Query: 249 IKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQ 428
           I+SL  Q++   VT   S     GG+L+NV G +  D D    + QT +L      + V+
Sbjct: 69  IQSLDAQRLPEGVTGDMS-----GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVK 123

Query: 429 HDIFR 443
            D FR
Sbjct: 124 SDRFR 128


>AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform a protein.
          Length = 137

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = +3

Query: 249 IKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQ 428
           I+SL  Q++   VT   S     GG+L+NV G +  D D    + QT +L      + V+
Sbjct: 75  IQSLDAQRLPEGVTGDMS-----GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVK 129

Query: 429 HDIFR 443
            D FR
Sbjct: 130 SDRFR 134


>Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical
           protein C15H11.3 protein.
          Length = 628

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 85  NPQYDAIGKGFVQQYYTLFDDP---AQRANLVNMYNVETSFMTFEGVQLQGA 231
           NPQ   + + FV  Y+  +D P     R NL N Y+ + S  +     L+G+
Sbjct: 359 NPQIRVLVEQFVTSYFDFYDGPDGQRTRRNLHNAYDADASTFSLTIEHLRGS 410


>U53139-10|AAK18937.1|  381|Caenorhabditis elegans Serpentine
           receptor, class w protein69 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 7   HILNFSAGIGLFVGVTNRHILI*MALNPQYDAIGKGFVQQYYTLF 141
           H    SA  G+ + +  R +++  ALNP+YDA+ K     Y ++F
Sbjct: 121 HSRRLSAWYGVMMALM-RFLIVKFALNPKYDALSKPLF-SYLSMF 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,371
Number of Sequences: 27780
Number of extensions: 329077
Number of successful extensions: 670
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)