Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30911
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 560 CVPNVKNSDSTVVCYIKFKLSIS 492
           CVP  + +DST++  ++ KLS S
Sbjct: 795 CVPVPQVNDSTILSPVREKLSSS 817


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 308 WLGIHSSYYSSDFLKSQT 255
           W+GIH    +SD   +QT
Sbjct: 353 WMGIHEPETTSDATSAQT 370


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +1

Query: 118 VQQYYTLFD---DPAQRANLVNMYNVETSFMTFEGV 216
           + Q YT FD   DP +  N+  +  V   +M   G+
Sbjct: 440 LNQLYTAFDVLTDPKKNPNVYKVETVGDKYMAVSGL 475


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 308 WLGIHSSYYSSDFLKSQT 255
           W+GIH    +SD   +QT
Sbjct: 353 WMGIHEPETTSDATSAQT 370


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +1

Query: 118 VQQYYTLFD---DPAQRANLVNMYNVETSFMTFEGV 216
           + Q YT FD   DP +  N+  +  V   +M   G+
Sbjct: 440 LNQLYTAFDVLTDPKKNPNVYKVETVGDKYMAVSGL 475


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 314 KHWLGIHSSYYS 279
           K+WL +H+SY S
Sbjct: 436 KNWLPVHTSYKS 447


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 576 YKKNIMCTKCQEF 538
           YK N+ C KC  +
Sbjct: 144 YKSNLKCDKCSTY 156


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -1

Query: 370 GGSSSHFNLPRTLIKTPPSNIG 305
           G S    NL   L+  PP N G
Sbjct: 364 GSSIPKLNLSTALMSQPPPNFG 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,761
Number of Sequences: 438
Number of extensions: 4382
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)