Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30911
(646 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2), puta... 50 2e-06
At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2), puta... 47 1e-05
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 44 7e-05
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 44 7e-05
At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2), puta... 42 4e-04
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 41 8e-04
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 39 0.002
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 39 0.002
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 36 0.017
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 36 0.023
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 36 0.023
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 29 2.0
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ... 27 8.1
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom... 27 8.1
>At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 122
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/52 (48%), Positives = 35/52 (67%)
Frame = +1
Query: 97 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKL 252
DA+ K FV+ YY+ FD A R LV++Y E S +TFEG ++QG+ I+ KL
Sbjct: 4 DAVAKAFVEHYYSTFD--ANRPGLVSLYQ-EGSMLTFEGQKIQGSQNIVAKL 52
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +3
Query: 246 KIKSLTFQKITRIVTAVDSQPMFD-GGVLINVLGRLKCDEDPPHL-YMQTFVLKPLGDSF 419
K+ L FQ+ +T VD QP GG+L+ V G L+ + L + Q F L ++
Sbjct: 51 KLTGLPFQQCKHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISNQGNY 110
Query: 420 YVQHDIFRL 446
YV +DIFRL
Sbjct: 111 YVFNDIFRL 119
>At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 126
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +1
Query: 97 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKL 252
DA+ K FV+ YY+ FD R L +Y E S +TFEG ++QG I+ KL
Sbjct: 7 DAVSKAFVEHYYSTFD--TNRVGLAGLYQ-EASMLTFEGQKIQGVQSIVAKL 55
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +3
Query: 246 KIKSLTFQKITRIVTAVDSQPMFDG-GVLINVLGRLK-CDEDPPHLYMQTFVLKPLGD-S 416
K+ SL FQ+ ++ VD QP G+L+ V G L+ E+ + Q F L P S
Sbjct: 54 KLTSLPFQQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGS 113
Query: 417 FYVQHDIFRL 446
FYV +DIFRL
Sbjct: 114 FYVFNDIFRL 123
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +3
Query: 246 KIKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYV 425
KI SL ++ T + D+Q + GV++ V GRL +++ + Q+F L P ++V
Sbjct: 65 KILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKGYFV 124
Query: 426 QHDIFR 443
+D+FR
Sbjct: 125 LNDVFR 130
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 85 NPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMT 204
+P + +G+ FV+QYY + Q LV+ + ++SF+T
Sbjct: 9 SPGAEVVGRAFVEQYYHILH---QSPGLVHRFYQDSSFLT 45
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +3
Query: 246 KIKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYV 425
KI SL ++ T + D+Q + GV++ V GRL +++ + Q+F L P ++V
Sbjct: 65 KILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKGYFV 124
Query: 426 QHDIFR 443
+D+FR
Sbjct: 125 LNDVFR 130
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 85 NPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMT 204
+P + +G+ FV+QYY + Q LV+ + ++SF+T
Sbjct: 9 SPGAEVVGRAFVEQYYHILH---QSPGLVHRFYQDSSFLT 45
>At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 127
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +1
Query: 97 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLK 255
+ + FV YY LFD+ R++L ++YN TS +TFEG + G I KLK
Sbjct: 10 EEVASAFVNHYYHLFDN--DRSSLSSLYN-PTSLLTFEGQTIYGVDNISNKLK 59
Score = 32.7 bits (71), Expect = 0.21
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +3
Query: 210 GSTTAGCC*NYGKIKSLTFQKITRIVTAVDSQPMF----DGGVLINVLGRLKC-DEDPPH 374
G T G K+K L F + +++ VDSQP GG+L+ V G ++ ED P
Sbjct: 45 GQTIYGVDNISNKLKQLPFDQCHHLISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPL 104
Query: 375 LYMQTFVL 398
+ Q ++L
Sbjct: 105 RFSQVYLL 112
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +3
Query: 246 KIKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYV 425
KI +L + I+ + VD+Q GG ++ V G L + + QTF L P ++V
Sbjct: 69 KIMALGYGVISAEIATVDTQESHGGGYIVLVTGYLTGKDSVRRTFSQTFFLAPQETGYFV 128
Query: 426 QHDIFR 443
+D+FR
Sbjct: 129 LNDMFR 134
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 246 KIKSLTFQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFY 422
++K LT+ +T+ D+Q +GG L+ V G +E + QTF L P F+
Sbjct: 66 ELKRLTYGDCNSAEITSYDTQESHNGGFLLFVTGYFTLNERSRRKFTQTFFLAPQEKGFF 125
Query: 423 VQHDIFR 443
V +DI R
Sbjct: 126 VLNDILR 132
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +3
Query: 279 RIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 443
+I+TA DSQ + GV+ V G L E + Q+F L PL S++V +D+FR
Sbjct: 77 QILTA-DSQASYMNGVVTLVTGLLTVKEGQRMRFSQSFFLVPLNGSYFVLNDVFR 130
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 36.3 bits (80), Expect = 0.017
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 240 YGKIKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDE-DPPHLYMQTFVLKPLGDS 416
+ + SL F I V ++S ++GGVL+ V G +K E ++QTF L P
Sbjct: 58 HNMVMSLNFTAIE--VKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKG 115
Query: 417 FYVQHDIF 440
++V D+F
Sbjct: 116 YFVLSDVF 123
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 35.9 bits (79), Expect = 0.023
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 249 IKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDE-DPPHLYMQTFVLKPLGDSFYV 425
+ SL F I V ++S ++GGVL+ V G +K E ++QTF L P ++V
Sbjct: 2 VMSLNFTAIE--VKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFV 59
Query: 426 QHDIF 440
D+F
Sbjct: 60 LSDVF 64
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 35.9 bits (79), Expect = 0.023
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 285 VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 443
+T+V SQ G+L+ V G L +E P + Q F L P + V D+FR
Sbjct: 341 ITSVTSQDSLKQGILVVVYGYLTFNERPARHFTQVFFLVPQEKGYIVCTDMFR 393
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 79 ALNPQYDAIGKGFVQQYYT-LFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLK 255
+++PQ+ +G GFVQ+YY L+D ++ V+ + +E S ++ G L G + ++ LK
Sbjct: 9 SVDPQF--VGNGFVQEYYNHLYDSTSE----VHKFYLEDSMISRPG--LDGEIVTIKSLK 60
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 246 KIKSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYV 425
+I S+ ++ + DSQ GV+ V G + ++ + Q+F L S++V
Sbjct: 65 QIMSIDYKSSRIEILTADSQSTLKNGVVTLVTGLVIGNDGGRRKFSQSFFLVSRNGSYFV 124
Query: 426 QHDIFR 443
+D FR
Sbjct: 125 LNDTFR 130
>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 703
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 122 NNITHCSMIRLNGQILLICTMLKLHS*PLRE 214
N++TH +I L QI+ + + + LHS P E
Sbjct: 26 NSVTHSEIISLIAQIISLVSSMDLHSQPKPE 56
>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 1027
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 169 QDLPVEPDHRTMCNIVAQNLYRLHR 95
QD PD R C+I ++Y LHR
Sbjct: 273 QDAKAFPDERLYCDICKTSIYDLHR 297
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,075,019
Number of Sequences: 28952
Number of extensions: 288396
Number of successful extensions: 579
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -