Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30909
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    33   0.037
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.80 
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   2.4  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    26   4.2  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    25   7.4  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   7.4  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 33.1 bits (72), Expect = 0.037
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 295 W*SFYDFLPWVVRLGIPSVVHAAYQIPPPSNLDAQGMTL 179
           W   YDF+ WV R  +    H A Q+ PP+N+  Q   L
Sbjct: 457 WGWLYDFMNWVTRYLLGISDHWALQMSPPTNVARQNFVL 495


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 297 RIPYGIP*ETALPIRRGSGRT*SQRASMTSCSRPPSNWQSYCDTHPP 437
           ++PY     + LPI        SQ+    S S+  SN    CD+HPP
Sbjct: 519 QLPYFHQSSSELPISASKRAALSQQTE--SASKSSSNISEMCDSHPP 563


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -1

Query: 274 LPWVVRLGIPSVVHAAYQIPPPSNLDAQGMTLPYSILPTN*ALVPVYTRPDRFRRAD 104
           LP  ++LG  +  + + Q P P  L+ + +  PY ++         +TR D + + D
Sbjct: 754 LPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISKKRYAGLFWTRTDTYDKMD 810


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 216 GIWYAACTTLGIPKRTTHGRKS*KLHHRIPYGI 314
           GI+ AAC  +G  K TTH     +   R+P GI
Sbjct: 158 GIFIAACINMGTHKYTTHP----EAQWRVPIGI 186


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 396 PPSNWQSYCDT 428
           PP+NW+SY DT
Sbjct: 149 PPNNWRSYFDT 159


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/52 (19%), Positives = 24/52 (46%)
 Frame = +2

Query: 137 NWNKRSICGENRVWECHALSVKVARRRYLVRGMYHTWNT*ADDPWKKIVEAS 292
           N+++   C      +C  + V+     Y++  ++H+W     D +K + + S
Sbjct: 840 NYDQEGQCQSYHYEDCQIMDVRNDYHLYIMTWLHHSWTLPYRDYFKIVTKTS 891


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,124
Number of Sequences: 5004
Number of extensions: 50586
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)