Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30909
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504     33   0.27 
12_01_0346 + 2652181-2653566                                           29   4.4  
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297...    28   5.8  
04_01_0100 + 1034057-1034308,1034962-1035078,1035152-1035382,103...    28   7.7  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     28   7.7  
01_01_1014 - 8022787-8023935                                           28   7.7  

>02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504
          Length = 331

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 272 SMGRPLRYSKCGTCRVPDTSAEQP*RSGHDTPILDSPHKLSACSSL--YET*PLPPRRRH 99
           +M R     K G C    +S+  P  +GH +P    P  L+ACSS   Y + P PP   H
Sbjct: 195 AMARSAAAIKAGGCYSNSSSSHDPAAAGHHSP-PPFPASLAACSSSHHYSSHPPPPPDHH 253


>12_01_0346 + 2652181-2653566
          Length = 461

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +2

Query: 296 PDSIWHSLRNCVAYQAGVWQNLITKGIDDVMQPAAFKLAIVLRHTPTEDCAKLMSELLKT 475
           P  + H L   +A   G   + +    D+   P  F+L I      T D   L+ E  K 
Sbjct: 36  PPRVPHRLGTVIAVDLGNTNSCVAGYGDEADAPPLFRLCIPTSVAFTGDGDALVGEAAKN 95

Query: 476 HPVSV 490
           HP ++
Sbjct: 96  HPAAI 100


>06_03_0551 - 22027441-22028224,22029015-22029344,22029510-22029778,
            22030530-22031453,22037761-22038360,22040049-22040267
          Length = 1041

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/73 (31%), Positives = 30/73 (41%)
 Frame = +1

Query: 139  LEQALNLWGESSMGVSCPERQGCSAEVSGTRHVPHLEYLSGRPMEENRRSFTTGFHMAFP 318
            LE+  NL     +GVS   R+ C    S      HLE LS    +EN R          P
Sbjct: 845  LEELKNLTQLRKLGVSGISRRNCREFCSAISGHAHLESLSVHLNKENNRGCLDAISKP-P 903

Query: 319  KKLRCLSGGGLAE 357
            + L+ L   G A+
Sbjct: 904  ENLKSLKLYGYAD 916


>04_01_0100 +
           1034057-1034308,1034962-1035078,1035152-1035382,
           1038200-1038455,1038551-1038807,1038978-1039250,
           1039617-1039898,1040045-1040165,1040351-1040520,
           1040613-1040711
          Length = 685

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 86  SCIFCDVGAAEAVRSRINWNKRSICGEN 169
           +C +  VG  + +  R+NW   S CG +
Sbjct: 612 TCRYIPVGLLDVIPQRLNWRPPSYCGRD 639


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 48  KRKQRNRPTEPSAVVYFVTSARRKRSGLV*TGTSAQFVGRIEYGSVMP 191
           K    ++P++P+A V + TS+  + S +  +  S++ V  +   SVMP
Sbjct: 43  KENSASKPSKPTAAVRWSTSSIPRASRIPSSVESSKLVSTLRASSVMP 90


>01_01_1014 - 8022787-8023935
          Length = 382

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = -1

Query: 268 WVVRLGIPSVVHAAYQIPPPSNLDAQGMTLPYSILPTN*ALVPVYTRPDRFRRADVTKYT 89
           WV+ + +P V H  +  PP + L       P++   T    VP    PDR    +     
Sbjct: 23  WVILVSVPHVAHDEFHFPPGTELRLNFGAPPFASRIT----VPRRIAPDRKAIDNYPYLA 78

Query: 88  TADGSVGR 65
            AD   GR
Sbjct: 79  AADERHGR 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,925,550
Number of Sequences: 37544
Number of extensions: 417698
Number of successful extensions: 1088
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)