Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30909
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_30475| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_17963| Best HMM Match : RVP (HMM E-Value=0.3)                       28   7.9  

>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 238 PHLEYLSGRPMEENRRSFTTGFHMAFPKKLRCL 336
           PH   LSG PM+ N R   + F   FP KL  L
Sbjct: 596 PHRIILSGSPMQNNLRELWSLFDFVFPGKLGTL 628


>SB_30475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 247 EYLSGRPMEENRRS-FTTGFHMAFPKKLRCLSGGGLAELDH 366
           EY+  RP+  + R+ +T  FH     K+  LSG G+A++ H
Sbjct: 6   EYVCKRPVFRSLRTRYTRNFHQCADLKMDKLSGFGIADVPH 46


>SB_17963| Best HMM Match : RVP (HMM E-Value=0.3)
          Length = 338

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 35  HALKQKKTTKPPNRTVSSC-IFCDVGAAEAV-RSRINWNKRSIC 160
           H+L+QK+TT+P  +   +C + C   +A+ + R R    +R  C
Sbjct: 6   HSLQQKRTTQPQQKAKKNCQVHCTFNSAKLLTRYRKRQRERLEC 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,511,300
Number of Sequences: 59808
Number of extensions: 441178
Number of successful extensions: 1098
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)