Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30909
(667 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF417489-1|AAN32667.1| 1445|Homo sapiens tensin 3 protein. 33 0.92
AF378756-1|AAL11993.1| 1205|Homo sapiens tumor endothelial marke... 33 0.92
AC073341-1|AAQ96841.1| 1205|Homo sapiens unknown protein. 33 0.92
AB208995-1|BAD92232.1| 1271|Homo sapiens Tensin 3 variant protein. 33 0.92
L04791-1|AAA52397.1| 1493|Homo sapiens excision repair protein p... 30 6.5
BC127104-1|AAI27105.1| 1493|Homo sapiens excision repair cross-c... 30 6.5
AY204752-1|AAO13487.1| 1493|Homo sapiens excision repair cross-c... 30 6.5
AL138760-2|CAH70291.1| 1493|Homo sapiens excision repair cross-c... 30 6.5
AB209504-1|BAD92741.1| 870|Homo sapiens excision repair cross-c... 30 6.5
>AF417489-1|AAN32667.1| 1445|Homo sapiens tensin 3 protein.
Length = 1445
Score = 33.1 bits (72), Expect = 0.92
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 106 RRGGSGQVSYKLEQALNLWGESSMGVSCPERQGCSAEVSGTRH-VPHLEYLSGRPMEENR 282
RRG S Q +L+Q L+ +G G S E ++ SGTRH VP +++G ++R
Sbjct: 414 RRGLSAQEKAELDQLLSGFGLEDPGSSLKEMTDARSKYSGTRHVVPAQVHVNGDAALKDR 473
Query: 283 RS 288
+
Sbjct: 474 ET 475
>AF378756-1|AAL11993.1| 1205|Homo sapiens tumor endothelial marker 6
protein.
Length = 1205
Score = 33.1 bits (72), Expect = 0.92
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 106 RRGGSGQVSYKLEQALNLWGESSMGVSCPERQGCSAEVSGTRH-VPHLEYLSGRPMEENR 282
RRG S Q +L+Q L+ +G G S E ++ SGTRH VP +++G ++R
Sbjct: 174 RRGLSAQEKAELDQLLSGFGLEDPGSSLKEMTDARSKYSGTRHVVPAQVHVNGDAALKDR 233
Query: 283 RS 288
+
Sbjct: 234 ET 235
>AC073341-1|AAQ96841.1| 1205|Homo sapiens unknown protein.
Length = 1205
Score = 33.1 bits (72), Expect = 0.92
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 106 RRGGSGQVSYKLEQALNLWGESSMGVSCPERQGCSAEVSGTRH-VPHLEYLSGRPMEENR 282
RRG S Q +L+Q L+ +G G S E ++ SGTRH VP +++G ++R
Sbjct: 174 RRGLSAQEKAELDQLLSGFGLEDPGSSLKEMTDARSKYSGTRHVVPAQVHVNGDAALKDR 233
Query: 283 RS 288
+
Sbjct: 234 ET 235
>AB208995-1|BAD92232.1| 1271|Homo sapiens Tensin 3 variant protein.
Length = 1271
Score = 33.1 bits (72), Expect = 0.92
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 106 RRGGSGQVSYKLEQALNLWGESSMGVSCPERQGCSAEVSGTRH-VPHLEYLSGRPMEENR 282
RRG S Q +L+Q L+ +G G S E ++ SGTRH VP +++G ++R
Sbjct: 524 RRGLSAQEKAELDQLLSGFGLEDPGSSLKEMTDARSKYSGTRHVVPAQVHVNGDAALKDR 583
Query: 283 RS 288
+
Sbjct: 584 ET 585
>L04791-1|AAA52397.1| 1493|Homo sapiens excision repair protein
protein.
Length = 1493
Score = 30.3 bits (65), Expect = 6.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 238 PHLEYLSGRPMEENRRSFTTGFHMAFPKKLRCL 336
PH LSG PM+ N R + F FP KL L
Sbjct: 668 PHRIILSGSPMQNNLRELWSLFDFIFPGKLGTL 700
>BC127104-1|AAI27105.1| 1493|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 1493
Score = 30.3 bits (65), Expect = 6.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 238 PHLEYLSGRPMEENRRSFTTGFHMAFPKKLRCL 336
PH LSG PM+ N R + F FP KL L
Sbjct: 668 PHRIILSGSPMQNNLRELWSLFDFIFPGKLGTL 700
>AY204752-1|AAO13487.1| 1493|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 1493
Score = 30.3 bits (65), Expect = 6.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 238 PHLEYLSGRPMEENRRSFTTGFHMAFPKKLRCL 336
PH LSG PM+ N R + F FP KL L
Sbjct: 668 PHRIILSGSPMQNNLRELWSLFDFIFPGKLGTL 700
>AL138760-2|CAH70291.1| 1493|Homo sapiens excision repair
cross-complementing rodent repairnt regulator of
chromatin, sub protein.
Length = 1493
Score = 30.3 bits (65), Expect = 6.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 238 PHLEYLSGRPMEENRRSFTTGFHMAFPKKLRCL 336
PH LSG PM+ N R + F FP KL L
Sbjct: 668 PHRIILSGSPMQNNLRELWSLFDFIFPGKLGTL 700
>AB209504-1|BAD92741.1| 870|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 870
Score = 30.3 bits (65), Expect = 6.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 238 PHLEYLSGRPMEENRRSFTTGFHMAFPKKLRCL 336
PH LSG PM+ N R + F FP KL L
Sbjct: 77 PHRIILSGSPMQNNLRELWSLFDFIFPGKLGTL 109
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,396,864
Number of Sequences: 237096
Number of extensions: 2145632
Number of successful extensions: 6631
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6631
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -