Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30909
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62560.1 68414.m07058 flavin-containing monooxygenase family ...    29   2.1  
At1g65860.1 68414.m07473 flavin-containing monooxygenase family ...    29   2.8  
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf...    28   4.9  
At1g62540.1 68414.m07056 flavin-containing monooxygenase family ...    28   4.9  
At5g39500.1 68418.m04783 pattern formation protein, putative sim...    27   8.5  
At4g28570.1 68417.m04087 alcohol oxidase-related low similarity ...    27   8.5  
At3g05680.1 68416.m00634 expressed protein                             27   8.5  

>At1g62560.1 68414.m07058 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase GB:AAA21178 GI:349534
           SP|P32417 from [Oryctolagus cuniculus]; contains Pfam
           profile PF00743 Flavin-binding monooxygenase-like
          Length = 462

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 222 WYAACTTLGIPKRTTH 269
           WYA+   LGIPKR TH
Sbjct: 368 WYASLDALGIPKRHTH 383


>At1g65860.1 68414.m07473 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase FMO3 (dimethylaniline
           monoxygenase (N-oxide forming) 3) GI:349533 [SP|P32417]
           from Oryctolagus cuniculus, [SP|P97501] from Mus
           musculus; contains Pfam profile PF00743 Flavin-binding
           monooxygenase-like domain
          Length = 459

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 222 WYAACTTLGIPKRTTH 269
           WYA    LGIPKR TH
Sbjct: 367 WYATLDVLGIPKRHTH 382


>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 883

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
 Frame = +2

Query: 71  NRTVSSCIFCDVGAAEAVRSRINWNKRSICGENRVWECHALSVKVARRRYLVRGMYHTWN 250
           +RT S  + C VG+  A   R+N +   +  E+ V E     V+V   + L  G     N
Sbjct: 205 SRTSSPFVNCSVGSVSADSLRLNGDSDCVLRESVVNE----EVEVCTIKNLDNGKEFVVN 260

Query: 251 T*ADD-PWKKIVEASPPDSI-WHSLRNCVAYQAGVWQNLITKGIDD 382
              +D  WKK+ E      +       CV +   V + +  + ++D
Sbjct: 261 EIQEDGTWKKVKEVGTGTQMTMEEFEMCVGHSPIVQELMRRQNVED 306


>At1g62540.1 68414.m07056 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase GB:AAA21178 GI:349534
           from Oryctolagus cuniculus [SP|P32417], SP|P97501 from
           Mus musculus; contains Pfam profile PF00743
           Flavin-binding monooxygenase-like
          Length = 457

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 222 WYAACTTLGIPKRTTH 269
           WYA+   +GIPKR TH
Sbjct: 367 WYASLDAVGIPKRYTH 382


>At5g39500.1 68418.m04783 pattern formation protein, putative
           similar to SP|Q42510 Pattern formation protein EMB30
           {Arabidopsis thaliana}; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1443

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 59  TKPPNRTVSSCIFCDVGAAEAV-RSRINWNKRSICGENRVWECHALSVKVARRR 217
           +KP    V+S I  ++GA  AV R  + W  R I  ++++      S+K  R++
Sbjct: 22  SKPSKGAVASMINSEIGAVLAVMRRNVRWGVRYIADDDQLEHSLIHSLKELRKQ 75


>At4g28570.1 68417.m04087 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]
          Length = 748

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 390 CMTSSMPFVIKFCQTPA**ATQFLRECHMESG 295
           C+  S PFV+KF Q P       LR    +SG
Sbjct: 108 CLDKSWPFVLKFSQLPLDKREAILRNWSRQSG 139


>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = -2

Query: 504  VSSSCTDTGCV--FRSSDINLAQSSVGV-C---RSTIASLKAAGCMTSSMPFVIKFCQ 349
            VS+S     C+  FRS  + L  S V + C   +  +ASL A  C     PFV+KFCQ
Sbjct: 1135 VSASSVIQWCIPAFRSISL-LCDSQVPLLCFQKKELLASLSAKDCALI-FPFVLKFCQ 1190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,045,503
Number of Sequences: 28952
Number of extensions: 296925
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)