Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30906
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 53 4e-08
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 49 7e-07
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc... 40 3e-04
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 31 0.20
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 28 1.4
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 28 1.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 28 1.4
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.4
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 1.8
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 27 4.2
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 26 5.6
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 5.6
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi... 26 5.6
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 26 5.6
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.4
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 25 9.8
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 53.2 bits (122), Expect = 4e-08
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Frame = +3
Query: 6 PEVFLHERSEAEDEFMVLACDGVWDVMSNDALCAYVHSLLQLTDDLVAITNQVIDTCLYK 185
P+V +H + +DEF++LACDG+WD S+ + +V + L I ++D C+
Sbjct: 214 PDVVIHN-IDPDDEFLILACDGIWDCKSSQQVVEFVRRGIVARQSLEVICENLMDRCIAS 272
Query: 186 GSK------DNMSIVLVVF 224
S+ DNM+I +V F
Sbjct: 273 NSESCGIGCDNMTICIVAF 291
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 49.2 bits (112), Expect = 7e-07
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Frame = +3
Query: 6 PEVFLHERSEAEDEFMVLACDGVWDVMSNDALCAYVHSLLQLTDDLVAITNQVIDTCLYK 185
P+V +HE ++ +DEF+VLACDG+WD ++ + +V + L I ++D C+
Sbjct: 211 PDVVVHEITD-DDEFVVLACDGIWDCKTSQQVIEFVRRGIVAGTSLEKIAENLMDNCIAS 269
Query: 186 GSK------DNMSIVLV 218
++ DNM++ +V
Sbjct: 270 DTETTGLGCDNMTVCIV 286
>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 347
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/59 (30%), Positives = 36/59 (61%)
Frame = +3
Query: 42 DEFMVLACDGVWDVMSNDALCAYVHSLLQLTDDLVAITNQVIDTCLYKGSKDNMSIVLV 218
DEF ++ACDG+WDV+S+ +V + + + V ++++ L + S DN++ ++V
Sbjct: 267 DEFFIIACDGLWDVVSDQEAVDFVRNFVSPREAAV----RLVEFALKRLSTDNITCIVV 321
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 31.1 bits (67), Expect = 0.20
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = -1
Query: 148 ATRSSVSCSKECTYAHSASLLMTSQTPS-HANTMNSSSASDLSCRNTSGS 2
++ SS S S + + S+S+ +TS T S H+++ +SSS+S S R +S S
Sbjct: 189 SSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSS 238
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -1
Query: 139 SSVSCSKECTYAHSASLLMTSQTPSHANTMNSSSASDLSCRNTSGS 2
SSVS + + + S S T+ T S +++ +SSS+S S ++S S
Sbjct: 130 SSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSS 175
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = -1
Query: 154 VIATRSSVSCSKECTYAHSASLLMTSQTPSHANTMNSSSASDLSCRNTSGS 2
V ++ S + S + + S+S T+ +PS +++ +SSS+S S ++S S
Sbjct: 127 VSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSS 177
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 6 PEVFLHERSEAEDEFMVLACDGVWDVMSND 95
PE+ + + F+++A DG+WD MS++
Sbjct: 324 PEIESITVNPKKHRFLIMASDGLWDTMSSE 353
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = +3
Query: 3 EPEVFLHERSEAEDEFMVLACDGVWDVMSNDALCAYVHSLLQLTDDLVAITNQVIDTCLY 182
EP++ + F+ L DG+ DV+S+D V +++L++ N +I
Sbjct: 287 EPQLTSIHSLRDDWSFLTLLSDGITDVVSDDE----VVDIIKLSESPQDAANNIIRYAQN 342
Query: 183 KGSKDNMSIVLVVFPAAPK 239
G+ D+++ ++V P K
Sbjct: 343 VGAVDDITCLVVRLPGWKK 361
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = +3
Query: 99 LCAYVHSLLQLTDDLVAITNQVIDTCLYKGSKDNMSIVLVVFPAAPKPNPEARRLTRSWM 278
L ++H ++LTD L + + I C+Y+ +++ + ++L KPN E + +
Sbjct: 1043 LILHMHGFVELTDQLATLESLTIRKCIYR-NQELLDLLLFSIHLV-KPNVETNDEVCNTL 1100
Query: 279 KRYD 290
K ++
Sbjct: 1101 KAWE 1104
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 148 ATRSSVSCSKECTYAHSASLLMTSQTPSHANTMNSSSASDLSCRNTSGS 2
A+ SS S S + S + +S TPS ++ +SSS+S S + S S
Sbjct: 115 ASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSS 163
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 153 TNQVIDTCLYKGSKDNMSIVLV-VFPAAPKPNPEARRLTRSWMKRYDK 293
T+Q + LYK +K N+S++L ++ + + R RSW++ K
Sbjct: 846 TDQYVPQLLYKSNKLNLSVILSDIYSCREEVLFQFNRHARSWIQNSSK 893
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Frame = +2
Query: 653 GCFCTAVASHS--RNKRSVKNSQLSRTYCCDIKHIASKRYAYFFSFSKH-TDVW 805
G C H N KN L TYCC I + + +F+ H + +W
Sbjct: 571 GANCQKCTKHYVLENDSLYKNRVLPFTYCCSIMLVLAYAIGLWFTLRTHASHIW 624
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -1
Query: 157 LVIATRSSVSCSKECTYAHSASLLMTSQTPSHANTMNSSSASDLSCRNTSGS 2
LV A+ ++ +C+ + A S++ S T +SSAS +S TSGS
Sbjct: 447 LVSASSATGTCASYLSAAGSSATNAISLTADSNAVSRNSSASTMSTSYTSGS 498
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 815 ESYTTHLYVSRKKKNKHTVLRQCVLYHNSRFETADY 708
ESY + +K + R CV+ N+ +ET DY
Sbjct: 955 ESYPSDSRFHFNSSSKSWLYRGCVITINAEYETGDY 990
>SPBC1539.01c |||mitochondrial ribosomal protein subunit
L15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 105 AYVHSLLQLTDDLVAITNQVIDTCL 179
+Y H L + + V++ N VID CL
Sbjct: 79 SYKHGLKRYNEPFVSVGNAVIDVCL 103
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 215 GGVPGGTQTEPRGEKADKELDETLRQRVTA 304
G P G QT E+ K LDE L +R +A
Sbjct: 158 GNTPSGAQTPAAEEENVKTLDEYLSERKSA 187
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 148 ATRSSVSCSKECTYAHSASLLMTSQTPSHANTMNSSS--ASDLSCRNTSGS 2
++ +S++ S T S+S TS + SHA + +SSS AS S +S S
Sbjct: 93 SSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSSSGMSSSS 143
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -1
Query: 136 SVSCSKECTYAHSASLLMTSQTPSHANTMNSSSAS-DLSCRNTSG 5
++S S A S+S M+S + SH++++ SSS+S S TSG
Sbjct: 122 ALSSSSSSLVASSSSSGMSSSSLSHSSSVPSSSSSYHSSSMTTSG 166
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 9.8
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +3
Query: 501 PILLSVSRN*TVHRTLVCRL*GHHHKVLVRLIRNETILWRQLMYVKR*IMADVFVLQWRV 680
P+ SV+R HR LV L + + R RN+ I L +V++ ++ VLQ
Sbjct: 170 PVEHSVARARVAHRHLVSGLCATEEEAIERTDRNDMI---NLTFVEKNMVTPDIVLQQLR 226
Query: 681 IREIK 695
++ +K
Sbjct: 227 LKTVK 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,328,021
Number of Sequences: 5004
Number of extensions: 64247
Number of successful extensions: 201
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -