Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30906
         (820 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24)                  70   3e-12
SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)              49   5e-06
SB_57481| Best HMM Match : PP2C (HMM E-Value=2.9e-32)                  40   0.002
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.37 
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   30   2.0  
SB_13499| Best HMM Match : PP2C (HMM E-Value=1.8e-06)                  29   6.0  

>SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24)
          Length = 316

 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 30/52 (57%), Positives = 42/52 (80%)
 Frame = +3

Query: 3   EPEVFLHERSEAEDEFMVLACDGVWDVMSNDALCAYVHSLLQLTDDLVAITN 158
           EP++F   RS+ +DEF+VLACDGVWDVM+ND + A+V S LQ+TDDL  +++
Sbjct: 107 EPDIFFQSRSD-QDEFIVLACDGVWDVMTNDEVGAFVRSRLQITDDLQRVSS 157


>SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)
          Length = 375

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 23/79 (29%), Positives = 43/79 (54%)
 Frame = +3

Query: 3   EPEVFLHERSEAEDEFMVLACDGVWDVMSNDALCAYVHSLLQLTDDLVAITNQVIDTCLY 182
           EP+V  +   + ++EF++LACDG+WD +  +     V   +   +D   +   ++D    
Sbjct: 203 EPDVAEYAL-DGDEEFVILACDGLWDTVKPEQAIKLVKEHIASGNDRCDVAKVLVDEAKQ 261

Query: 183 KGSKDNMSIVLVVFPAAPK 239
           +GS DN+S+++V   A  K
Sbjct: 262 EGSSDNISVLVVFLDAHRK 280


>SB_57481| Best HMM Match : PP2C (HMM E-Value=2.9e-32)
          Length = 435

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +3

Query: 3   EPEVFLHERSEAEDEFMVLACDGVWDVMSNDALCAYV 113
           EPEV  ++     D+F+VLA DG+WD++SN+ +  YV
Sbjct: 313 EPEVMSYQLQRT-DKFLVLATDGLWDMLSNEEVVHYV 348


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 3    EPEVFLHERSEAEDEFMVLACDGVWDVMSND 95
            EP V    +  ++D F++LA DG+WD MS+D
Sbjct: 1274 EP-VVTKRQLRSKDRFLILATDGLWDSMSSD 1303


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 3   EPEVFLHERSEAEDEFMVLACDGVWDVMSNDALCAYVHSLLQLTD 137
           +P V      EA D+F++LA +GVW+V S + +   +  L+   D
Sbjct: 736 QPSVNCVTLDEA-DQFVILATNGVWEVFSEEEVILLLEDLMPELD 779


>SB_13499| Best HMM Match : PP2C (HMM E-Value=1.8e-06)
          Length = 177

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 6   PEVFLHERSEAEDEFMVLACDGVWDVMSND 95
           P+V ++  + A D+ ++LA DG+W V+  D
Sbjct: 137 PDVKVYTINPATDKHVILASDGLWGVVQPD 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,685,640
Number of Sequences: 59808
Number of extensions: 503079
Number of successful extensions: 1411
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)