Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30906
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              24   1.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   7.8  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 785 RKKKNKHTVLRQCVLYHNSRFETADY 708
           R+KKNK  +  +CV   N+  E A Y
Sbjct: 28  RRKKNKKPLPTECVFCRNNGEEEAYY 53


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 424 GLFGGQTSTWRQTRYV-LLHQ 365
           G+FGG   +WR+ R    LHQ
Sbjct: 166 GVFGGSAWSWREERQAYYLHQ 186


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 424 GLFGGQTSTWRQTRYV-LLHQ 365
           G+FGG   +WR+ R    LHQ
Sbjct: 166 GVFGGSAWSWREERQAYYLHQ 186


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = +1

Query: 649 WRMFLYC--SGESFEK 690
           WR FLYC    ESF K
Sbjct: 426 WRQFLYCLAGDESFRK 441


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 449 FYPDHVDSSERFNCEDLADSIKRITK 526
           FY  H     R+NCE L + + R+ +
Sbjct: 234 FYYMHQQIMARYNCERLCNRLGRVKR 259


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 320 GCEEDCEEFSWVLKQLMQEN 379
           GCE  CE++   LK L  E+
Sbjct: 287 GCEVICEDYQAFLKHLNTEH 306


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 115 ILYCSSLMTLWLSP 156
           +L   +LMTLWL P
Sbjct: 256 VLMTMTLMTLWLEP 269


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 185 LIKAGINDLIGDSHKVISELQ*RMHICTQCIITH 84
           LIKA I+    D H    E+  ++H+   CI  H
Sbjct: 73  LIKAIIDS---DRHSTTREIAEKLHVSHTCIENH 103


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 201 MSIVLVVFPAAPKPNPEARRLTRSWMKRYDK 293
           M IVLV+       NP+A+RL    +  Y+K
Sbjct: 9   MWIVLVLISGC-SGNPDAKRLYDDLLSNYNK 38


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 28  DQKQKMNSWYWRVMEFGM 81
           ++ +K+++ YW  +EFG+
Sbjct: 369 EEIEKLSTIYWFTVEFGL 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,235
Number of Sequences: 438
Number of extensions: 4671
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)