Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30904X
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    42   8e-05
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   4.4  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   5.8  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   5.8  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   5.8  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    25   7.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.7  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 41.5 bits (93), Expect = 8e-05
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +3

Query: 303 FGSLIIGYARNPSLKQQLFSYAILGFALSE 392
           F +LI G +RNPS++  LFS AILGFAL+E
Sbjct: 28  FSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 51  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 164
           + VC    R C ++ +   L   + +C  +    DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 509 WSGQPWNRMVGNLTLIVM 562
           WS + +NRM+GN+  I++
Sbjct: 363 WSTRLFNRMIGNILFIIL 380


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 220 DIDSAARFIGAGQRQWE*LVPELVLEQSSAPSS 318
           D++SAA FI +GQ +   LVP  ++  +S  SS
Sbjct: 31  DVESAAEFIFSGQLEKSRLVP--IMSSTSIASS 61


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 125 HLQQYPPIHRWYLLSLHSSLQC 190
           HL  Y P   WYL SLH    C
Sbjct: 63  HLTIYEPQLTWYLSSLHRITGC 84


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 139 PTHTQMVPAVPTQLSAVRS 195
           P HT  VPAVP+Q+  + S
Sbjct: 182 PVHTPAVPAVPSQVKDLPS 200


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 370 FWVSPCLRLWVCSVL*WRSCCSSLSKLFTFKNTTTAILHMRFQCILLEWTAM-ESNGWKP 546
           FW+S  +    C+ +    CC +L+K+ + ++T  ++L   F+   +      E N    
Sbjct: 684 FWMSNEVTSVNCTGIVLSFCCDNLAKIGSGQSTRVSVLLRLFKLAFMTVNVFPEKNAEVL 743

Query: 547 HPH 555
            PH
Sbjct: 744 RPH 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,869
Number of Sequences: 5004
Number of extensions: 43485
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)