Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30904X
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.36
03_06_0422 + 33818887-33819996 31 0.63
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 1.1
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 29 2.6
07_03_1191 + 24690936-24691029,24691184-24691377 29 2.6
02_01_0775 + 5775949-5777385 29 2.6
03_02_0662 - 10250235-10250433,10250692-10253105 29 3.4
11_03_0005 - 8871625-8872616,8872807-8872933,8873466-8874209,887... 28 4.5
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 4.5
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 28 4.5
03_05_0957 + 29195549-29196706,29198590-29198868 28 4.5
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 4.5
01_05_0490 + 22672241-22674679 28 5.9
07_01_0800 - 6276423-6276833 27 7.8
04_03_1022 - 21778315-21779007 27 7.8
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 57 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 185
VC T++P +QVC+ +C G CS+ + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>03_06_0422 + 33818887-33819996
Length = 369
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -1
Query: 443 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 273
E ++ER + E+T SL + N E ++L+G D+ +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 57 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 158
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 234 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 64
S +N+++ RCG HC L + L + H + E G GC DQSG
Sbjct: 20 SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 57 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 167
VC++T+ C+Q CH + L G T S + D CC
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75
>02_01_0775 + 5775949-5777385
Length = 478
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -3
Query: 144 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGARQQRTPR 7
GG +W Q RV G GC G + CGA P+
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGAPMVAVPQ 392
>03_02_0662 - 10250235-10250433,10250692-10253105
Length = 870
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 246 NESRSRVNV--LSDRCGLEGPHCRELCRDSRYHLCMGGYCCK 127
NES ++ V + D GP+ + L +DS++H + G CC+
Sbjct: 806 NESVTKAGVAMVGDLADALGPNIKLLFKDSKFHSELLGQCCQ 847
>11_03_0005 -
8871625-8872616,8872807-8872933,8873466-8874209,
8874287-8874328,8874898-8874993,8877589-8877662,
8877681-8878344
Length = 912
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 326 IADDEGAEDCSNTSSGTSYSHCRCPAPMNL 237
++D E ED + S + S RCP+P+NL
Sbjct: 473 VSDAELKEDVTRKPSNENRSGTRCPSPVNL 502
>11_01_0662 -
5389746-5390548,5390727-5391368,5391624-5391659,
5392314-5392377
Length = 514
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 452 NSLESEEQQERHHKTEQTHSLRQ 384
NS+ E QE+ H E+TH LRQ
Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/69 (21%), Positives = 28/69 (40%)
Frame = -1
Query: 491 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDE 312
L C + + + + ++ +T + Q T NG E L GG ++ +
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390
Query: 311 GAEDCSNTS 285
GAE S+ +
Sbjct: 391 GAESVSSNA 399
>03_05_0957 + 29195549-29196706,29198590-29198868
Length = 478
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -3
Query: 288 QLRNQLLPLSLPSTNESRSRVNVLSDRCGLEGPHCREL 175
Q+R +L+ LP N R+ V + +CG + P+C+EL
Sbjct: 386 QVRTKLVRSWLPVLNVCRNMVQPM--QCGYKSPNCQEL 421
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 211 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 65
P+W G ++ AV G + P+ +G+ ++ P Q+ + W+ VW
Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56
>01_05_0490 + 22672241-22674679
Length = 812
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 250 AGQRQWE*LVPELVLEQSSAPSSSAMPGTPP 342
A R+W + E+VLEQ S + MP PP
Sbjct: 312 ARSRRWNPEMLEVVLEQESRVEETTMPPPPP 342
>07_01_0800 - 6276423-6276833
Length = 136
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 329 GIADDEGAEDCSNTSSGTSYSHCRCPA 249
G D++ +DC + S CRCPA
Sbjct: 41 GAVDEQVRQDCCRQLAAIDDSFCRCPA 67
>04_03_1022 - 21778315-21779007
Length = 230
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +2
Query: 23 CRAPHLIKTKCCLPPD*SPLQPGL--PSSATLHWCDHLQQYPPIH 151
C + HL+ PP + P L PS A W DH Y P H
Sbjct: 29 CSSAHLLPPPPPPPPPPPYVPPHLLPPSPAPQQWYDHPPNYHPPH 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,584,147
Number of Sequences: 37544
Number of extensions: 352897
Number of successful extensions: 1296
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -