Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30904X
(563 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 62 3e-10
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 62 3e-10
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 62 3e-10
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 3.1
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 29 3.1
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 29 3.1
AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical ... 29 3.1
Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical p... 28 5.3
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 28 5.3
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p... 27 9.3
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p... 27 9.3
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr... 27 9.3
AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical ... 27 9.3
AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear recep... 27 9.3
AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear recep... 27 9.3
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 62.1 bits (144), Expect = 3e-10
Identities = 28/30 (93%), Positives = 30/30 (100%)
Frame = +3
Query: 303 FGSLIIGYARNPSLKQQLFSYAILGFALSE 392
FG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 46 FGALVIGYARNPSLKQQLFSYAILGFALSE 75
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +1
Query: 184 AVRSFQTTSVTKDIDSAARFIGAG 255
A R TT KDIDSAA++IGAG
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAG 29
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 62.1 bits (144), Expect = 3e-10
Identities = 28/30 (93%), Positives = 30/30 (100%)
Frame = +3
Query: 303 FGSLIIGYARNPSLKQQLFSYAILGFALSE 392
FG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 46 FGALVIGYARNPSLKQQLFSYAILGFALSE 75
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +1
Query: 184 AVRSFQTTSVTKDIDSAARFIGAG 255
A R TT KDIDSAA++IGAG
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAG 29
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 62.1 bits (144), Expect = 3e-10
Identities = 28/30 (93%), Positives = 30/30 (100%)
Frame = +3
Query: 303 FGSLIIGYARNPSLKQQLFSYAILGFALSE 392
FG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 70 FGALVIGYARNPSLKQQLFSYAILGFALSE 99
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +1
Query: 184 AVRSFQTTSVTKDIDSAARFIGAG 255
A R TT KDIDSAA++IGAG
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAG 53
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +3
Query: 111 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 200
C+ C + D CCPY + C A P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 51 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 176
N C P + C+ T C+S + +G CCP T
Sbjct: 106 NTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 156 HLCMGGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGARQQRT 13
++C G CC ++ + G P G S G Q F + G R QR+
Sbjct: 103 YICSNGACCPNTNSNTCSTTGTPCFTGQISVGGQCFNSVNIGDRCQRS 150
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +3
Query: 48 QNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 176
QN C P + C + C+S + ++G CCP T
Sbjct: 72 QNTQCGTNSSPQVSASGQVVTCFTNSQCASGYICSNGACCPNT 114
>AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical
protein F28A10.1 protein.
Length = 311
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 436 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 308
KSSR I ++ I KP E N C+ + FLA PM E
Sbjct: 21 KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63
>Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical
protein F36G9.1 protein.
Length = 356
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 478 ILHMRFQCILLEWTAMESNG-WKPHP 552
I H+ F L+WT ++ NG WKP P
Sbjct: 174 IPHIPFWFFDLQWTEIQENGIWKPPP 199
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -3
Query: 231 RVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGYCCKWSHQC 112
RV ++ C P CR +LC SRY M YC K C
Sbjct: 321 RVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENYCPKACGHC 363
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
protein W05B2.2 protein.
Length = 1278
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 102 LQLCTGATTCSSTHPYTDGTCCPYTA 179
+Q C+G C TH + CCP A
Sbjct: 373 VQRCSGKEHCPETHDCKNTVCCPKPA 398
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 57 VCRQT-DRPCSQVCHLLQLCTGATT---CSSTHPYTDGTCC 167
+C+QT C Q ++ C +++ CSS + G+CC
Sbjct: 330 ICQQTCQNTCQQAAQIVVPCQSSSSGCGCSSGYSQCGGSCC 370
>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 176 CVGTAGTICVWVGTAASG-RTSAELQK 99
CVG GT+C + +G +TS +LQK
Sbjct: 375 CVGVLGTVCDVIQLGVTGSKTSPDLQK 401
>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 176 CVGTAGTICVWVGTAASG-RTSAELQK 99
CVG GT+C + +G +TS +LQK
Sbjct: 416 CVGVLGTVCDVIQLGVTGSKTSPDLQK 442
>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 176 CVGTAGTICVWVGTAASG-RTSAELQK 99
CVG GT+C + +G +TS +LQK
Sbjct: 375 CVGVLGTVCDVIQLGVTGSKTSPDLQK 401
>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 176 CVGTAGTICVWVGTAASG-RTSAELQK 99
CVG GT+C + +G +TS +LQK
Sbjct: 416 CVGVLGTVCDVIQLGVTGSKTSPDLQK 442
>AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical
protein H01A20.1 protein.
Length = 463
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 138 YCCKWSHQCRVAEDGRPGCR 79
Y C++S +CR+ + GR CR
Sbjct: 87 YVCRYSKKCRIDKAGRNVCR 106
>AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 138 YCCKWSHQCRVAEDGRPGCR 79
Y C++S +CR+ + GR CR
Sbjct: 87 YVCRYSKKCRIDKAGRNVCR 106
>AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 138 YCCKWSHQCRVAEDGRPGCR 79
Y C++S +CR+ + GR CR
Sbjct: 87 YVCRYSKKCRIDKAGRNVCR 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,410,612
Number of Sequences: 27780
Number of extensions: 275536
Number of successful extensions: 1094
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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